Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.1e-79 298.9 144 100.0
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 2.1e-79 298.9 144 100.0
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.4e-75 286.2 144 93.1
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 2.4e-75 285.4 144 93.1
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 7.0e-75 283.9 151 90.1
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 7.0e-75 283.9 151 90.1
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 9.1e-75 283.5 143 92.3
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 1.3e-73 279.6 144 91.0
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 2.2e-73 278.9 144 90.3
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 2.9e-73 278.5 144 90.3
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 3.8e-73 278.1 144 90.3
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 6.5e-73 277.3 144 89.6
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 8.5e-73 276.9 144 90.3
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 1.5e-72 276.2 141 91.5
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 1.9e-72 275.8 144 90.3
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 7.2e-72 273.9 144 89.6
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 7.2e-72 273.9 144 88.9
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 9.4e-72 273.5 144 88.9
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.6e-71 272.7 144 88.9
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 1.6e-71 272.7 144 88.2
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 1.6e-71 272.7 144 90.3
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 1.6e-71 272.7 144 90.3
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.1e-71 272.3 144 88.2
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 2.7e-71 271.9 144 89.6
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 87.5
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 86.8
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 3.6e-71 271.6 144 88.9
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 88.2
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 89.6
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 4.7e-71 271.2 144 89.6
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 88.2
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 88.2
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 88.9
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 86.8
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 88.2
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 6.1e-71 270.8 144 88.2
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 86.8
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 88.9
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 87.5
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 87.5
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 87.5
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 87.5
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 86.8
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 8.0e-71 270.4 154 85.1
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 8.0e-71 270.4 144 86.8
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 1.0e-70 270.0 144 88.9
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 1.0e-70 270.0 144 86.8
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 86.8
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 86.1
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 87.5
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 89.6
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.4e-70 269.6 144 86.8
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 86.8
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 1.8e-70 269.2 144 86.8
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 1.8e-70 269.2 142 88.7
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 2.3e-70 268.9 144 87.5
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 87.5
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 3.0e-70 268.5 144 86.8
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 4.0e-70 268.1 144 87.5
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 5.2e-70 267.7 144 86.8
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 6.8e-70 267.3 144 86.1
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 8.8e-70 266.9 144 86.1
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.5e-69 266.2 144 85.4
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 1.5e-69 266.2 144 86.1
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 2.0e-69 265.8 142 86.6
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 86.1
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 86.1
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 86.1
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 86.1
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 2.0e-69 265.8 144 85.4
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 86.1
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 84.0
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 86.8
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 2.6e-69 265.4 144 86.1
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.4e-69 265.0 144 84.7
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 4.4e-69 264.6 144 85.4
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 4.4e-69 264.6 144 85.4
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 4.4e-69 264.6 175 75.4
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 4.4e-69 264.6 144 84.7
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 5.7e-69 264.2 144 86.1
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 7.5e-69 263.8 144 84.7
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 9.8e-69 263.5 144 86.1
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 9.8e-69 263.5 144 86.8
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 1.3e-68 263.1 144 85.4
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 2.2e-68 262.3 144 84.0
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 3.7e-68 261.5 144 85.4
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 84.7
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 6.3e-68 260.8 144 84.7
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 86.1
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 8.3e-68 260.4 144 84.7
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 1.4e-67 259.6 144 86.8
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 1.8e-67 259.2 144 83.3
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.8e-67 259.2 144 84.0
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.8e-67 259.2 144 84.0
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.8e-67 259.2 135 90.4
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.4e-67 258.8 144 83.3
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 2.4e-67 258.8 144 84.0
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 3.1e-67 258.5 144 84.7
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 4.1e-67 258.1 144 83.3
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 7.0e-67 257.3 144 83.3
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 9.1e-67 256.9 142 85.2
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.2e-66 256.5 144 82.6
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 1.2e-66 256.5 144 83.3
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 5.9e-66 254.2 144 81.9
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 6.5e-65 250.8 135 86.7
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 9.5e-64 246.9 143 79.0
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 2.3e-62 242.3 139 81.3
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 1.4e-59 233.0 144 72.9
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 1.6e-58 229.6 177 65.5
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 8.6e-57 223.8 144 76.4
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 1.6e-55 219.5 260 48.1
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 1.4e-54 216.5 144 72.2
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 8.3e-52 207.2 308 42.2
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 9.2e-51 203.8 144 66.0
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 6.6e-49 197.6 139 71.9
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 8.6e-49 197.2 141 64.5
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.1e-48 196.8 141 66.0
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 5.6e-48 194.5 142 64.8
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 6.2e-47 191.0 117 79.5
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 1.1e-46 190.3 142 67.6
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 2.3e-46 189.1 138 64.5
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 1.1e-38 163.7 84 91.7
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 2.0e-37 159.5 82 90.2
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 3.7e-36 155.2 93 78.5
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 2.7e-34 149.1 142 50.7
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 4.6e-34 148.3 75 93.3
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 1.3e-33 146.7 71 95.8
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.3e-33 146.7 75 88.0
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 7.3e-32 141.0 89 74.2
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 3.6e-31 138.7 73 87.7
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 3.6e-31 138.7 73 87.7
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 3.8e-28 128.6 133 48.9
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 2.4e-27 125.9 143 45.5
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 5.4e-27 124.8 70 78.6
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 2.3e-25 119.4 77 74.0
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 2.5e-24 115.9 63 82.5
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 5.6e-24 114.8 156 46.8
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 9.6e-24 114.0 64 79.7
Cc05_g03600 Coffea canephora HOM05D004446 ORTHO05D005346 2.4e-22 109.4 74 74.3
SHI08306 Sapria himalayana HOM05D004446 ORTHO05D005346 9.6e-16 87.4 63 66.7
C03p21790 Brassica napus HOM05D004446 ORTHO05D005346 3.4e-13 79.0 45 80.0
SHI22881 Sapria himalayana HOM05D004446 ORTHO05D005346 9.9e-13 77.4 56 69.6
PRCOL_00006069 Prasinoderma coloniale HOM05D004446 ORTHO05D005346 1.6e-10 70.1 99 38.4
CSS0009466 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 9.6e-08 60.8 30 83.3
unitig_32.g10861 Utricularia gibba HOM05D004446 ORTHO05D005346 1.1e-06 57.4 95 42.1


User provided reference genes

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