Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044145 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 5.8e-94 347.4 163 100.0
CSS0025806 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.6e-80 302.8 163 87.1
CSS0020060 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 7.8e-22 107.8 52 88.5
CSS0030774 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 7.8e-22 107.8 52 88.5
CSS0008176 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 9.2e-15 84.3 55 61.8
CSS0029440 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 9.2e-15 84.3 55 61.8
CSS0041206 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 9.2e-15 84.3 55 61.8
CSS0048347 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 1.2e-14 84.0 55 61.8
CSS0045597 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.0e-14 83.2 55 60.0
CSS0017977 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 6.0e-14 81.6 54 61.1
CSS0034492 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 6.0e-14 81.6 55 60.0
CSS0015566 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.3e-13 79.7 54 59.3
Dinv16998 Davidia involucrata HOM05D002515 ORTHO05D002722 1.1e-12 77.4 55 60.0
Dinv43153 Davidia involucrata HOM05D002515 ORTHO05D002722 1.1e-12 77.4 55 60.0
Rhsim13G0082900 Rhododendron simsii HOM05D002515 ORTHO05D002722 1.1e-12 77.4 55 65.5
vmacro03074 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 5.6e-12 75.1 55 61.8
CSS0039820 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 1.6e-11 73.6 96 44.8
CSS0049652 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 3.6e-11 72.4 105 42.9
Duzib268G1344 Durio zibethinus HOM05D000150 ORTHO05D000108 1.1e-10 70.9 45 71.1
Actinidia07036 Actinidia chinensis HOM05D002515 ORTHO05D002722 1.8e-10 70.1 54 57.4
CiPaw.05G146200 Carya illinoinensis HOM05D000150 ORTHO05D000108 1.8e-10 70.1 41 78.0
Thecc.02G242200 Theobroma cacao HOM05D000150 ORTHO05D000108 1.8e-10 70.1 53 62.3
Actinidia37204 Actinidia chinensis HOM05D002515 ORTHO05D002722 3.1e-10 69.3 55 58.2
CSS0024264 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 3.1e-10 69.3 54 55.6
Rhsim12G0050400 Rhododendron simsii HOM05D000150 ORTHO05D000108 4.0e-10 68.9 52 61.5
Atru.chr11.1958 Acer truncatum HOM05D000150 ORTHO05D000108 6.8e-10 68.2 45 66.7
CSS0016698 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 8.9e-10 67.8 108 39.8
CSS0027481 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 8.9e-10 67.8 108 39.8
Gohir.D05G321300 Gossypium hirsutum HOM05D000150 ORTHO05D000108 8.9e-10 67.8 45 66.7
Gorai.009G344800 Gossypium raimondii HOM05D000150 ORTHO05D000108 8.9e-10 67.8 45 66.7
Gorai.011G176600 Gossypium raimondii HOM05D000150 ORTHO05D000108 8.9e-10 67.8 45 66.7
QL03p062770 Quercus lobata HOM05D000150 ORTHO05D000108 8.9e-10 67.8 45 71.1
QL03p066769 Quercus lobata HOM05D000150 ORTHO05D000108 8.9e-10 67.8 45 71.1
QL03p066829 Quercus lobata HOM05D000150 ORTHO05D000108 8.9e-10 67.8 45 71.1
vmacro01198 Vaccinium macrocarpon HOM05D000150 ORTHO05D000108 8.9e-10 67.8 45 66.7
Gohir.A01G142101 Gossypium hirsutum HOM05D000150 ORTHO05D000108 1.2e-09 67.4 45 66.7
Gohir.D01G133300 Gossypium hirsutum HOM05D000150 ORTHO05D000108 1.2e-09 67.4 45 66.7
Gorai.002G164900 Gossypium raimondii HOM05D000150 ORTHO05D000108 1.2e-09 67.4 45 66.7
COL.COLO4_37896 Corchorus olitorius HOM05D000150 ORTHO05D000108 2.0e-09 66.6 45 66.7
FvH4_4g35051 Fragaria vesca HOM05D000150 ORTHO05D000108 2.0e-09 66.6 60 51.7
FAN12G2289 Fragaria x ananassa HOM05D000150 ORTHO05D000108 2.0e-09 66.6 60 51.7
Gohir.A05G319100 Gossypium hirsutum HOM05D000150 ORTHO05D000108 2.6e-09 66.2 45 64.4
Prupe.1G260100 Prunus persica HOM05D000150 ORTHO05D000108 2.6e-09 66.2 45 68.9
CSS0031957 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 3.4e-09 65.9 45 71.1
MD16G1086300 Malus domestica HOM05D000150 ORTHO05D000108 3.4e-09 65.9 45 66.7
Dinv31113 Davidia involucrata HOM05D000150 ORTHO05D000108 4.4e-09 65.5 45 68.9
FAN22G0665 Fragaria x ananassa HOM05D000150 ORTHO05D000108 4.4e-09 65.5 45 62.2
FAN17G0029 Fragaria x ananassa HOM05D000150 ORTHO05D000108 5.8e-09 65.1 45 62.2
RcHm_v2.0_Chr4g0444591 Rosa chinensis HOM05D000150 ORTHO05D000108 5.8e-09 65.1 45 64.4
RcHm_v2.0_Chr4g0444641 Rosa chinensis HOM05D000150 ORTHO05D000108 9.8e-09 64.3 45 64.4
CANSAT01G0622 Cannabis sativa HOM05D000150 ORTHO05D000108 1.7e-08 63.5 45 62.2
Lju50A24T52 Lonicera japonica HOM05D000150 ORTHO05D000108 1.7e-08 63.5 45 64.4
Ciclev10031201m.g Citrus clementina HOM05D000150 ORTHO05D000108 2.2e-08 63.2 45 57.8
FvH4_4g35050 Fragaria vesca HOM05D000150 ORTHO05D000108 2.2e-08 63.2 45 62.2
Psat2g114240 Pisum sativum HOM05D000150 ORTHO05D000108 2.2e-08 63.2 45 64.4
GSVIVG01020177001 Vitis vinifera HOM05D000150 ORTHO05D000108 2.9e-08 62.8 45 64.4
AUR62026575 Chenopodium quinoa HOM05D000150 ORTHO05D000108 3.7e-08 62.4 62 50.0
Ca_18092_v3 Cicer arietinum L. HOM05D000150 ORTHO05D000108 3.7e-08 62.4 45 62.2
Lalb_Chr16g0382481 Lupinus albus HOM05D000150 ORTHO05D000108 3.7e-08 62.4 45 62.2
Haze_12103 Corylus avellana HOM05D000150 ORTHO05D000108 4.9e-08 62.0 106 39.6
Haze_12135 Corylus avellana HOM05D000150 ORTHO05D000108 4.9e-08 62.0 106 39.6
Glyma.01G036000 Glycine max HOM05D000150 ORTHO05D000108 6.4e-08 61.6 45 62.2
Duzib248G1663 Durio zibethinus HOM05D000150 ORTHO05D000108 8.3e-08 61.2 45 60.0
Migut.L01449 Erythranthe guttata HOM05D000150 ORTHO05D000108 1.4e-07 60.5 34 73.5
Cfa009100 Carpinus fangiana HOM05D000150 ORTHO05D000108 1.9e-07 60.1 45 64.4
Glyma.02G029900 Glycine max HOM05D000150 ORTHO05D000108 1.9e-07 60.1 45 60.0
TPR.G13511 Trifolium pratense HOM05D000150 ORTHO05D000108 1.9e-07 60.1 45 62.2
Phvul.002G075200 Phaseolus vulgaris HOM05D000150 ORTHO05D000108 2.4e-07 59.7 45 60.0
Gohir.D10G156045 Gossypium hirsutum HOM05D000150 ORTHO05D000108 3.2e-07 59.3 45 57.8
Lj2g0002776 Lotus japonicus HOM05D000150 ORTHO05D000108 3.2e-07 59.3 45 57.8
Medtr5g035560 Medicago truncatula HOM05D000150 ORTHO05D000108 4.1e-07 58.9 45 60.0
Medtr5g035580 Medicago truncatula HOM05D000150 ORTHO05D000108 4.1e-07 58.9 45 60.0
Ah.03g132330 Amaranthus hybridus HOM05D000150 ORTHO05D000108 5.4e-07 58.5 34 73.5
arahy.Tifrunner.gnm1.ann1.X4ZQ0T Arachis hypogaea HOM05D000150 ORTHO05D000108 7.1e-07 58.2 45 55.6
Cpa.g.sc5.342 Carica papaya HOM05D000150 ORTHO05D000108 7.1e-07 58.2 45 60.0
ECA247G2589 Erigeron canadensis HOM05D002515 ORTHO05D002722 7.1e-07 58.2 44 47.7
Manes.05G091100 Manihot esculenta HOM05D000150 ORTHO05D000108 9.2e-07 57.8 45 55.6
PGSC0003DMG400009525 Solanum tuberosum HOM05D000150 ORTHO05D000108 9.2e-07 57.8 59 45.8
PGSC0003DMG400009528 Solanum tuberosum HOM05D000150 ORTHO05D000108 9.2e-07 57.8 59 42.4
EL10Ac2g04589 Beta vulgaris HOM05D000150 ORTHO05D000108 1.2e-06 57.4 34 70.6
EL10Ac5g10581 Beta vulgaris HOM05D000150 ORTHO05D000108 1.2e-06 57.4 60 43.3
SalBow2G3328 Salvia bowleyana HOM05D000150 ORTHO05D000108 1.2e-06 57.4 34 70.6
VMungo1215G0954 Vigna mungo HOM05D000150 ORTHO05D000108 1.2e-06 57.4 42 59.5
Aa31LG7G7880 Aethionema arabicum HOM05D000150 ORTHO05D000108 1.6e-06 57.0 46 60.9
Nn1g09512 Nelumbo nucifera HOM05D000150 ORTHO05D000108 1.6e-06 57.0 43 55.8
Oeu019195.1 Olea europaea HOM05D006354 ORTHO05D007773 1.6e-06 57.0 54 40.7
PSO675G2670 Papaver somniferum HOM05D000150 ORTHO05D000108 1.6e-06 57.0 45 51.1
PSO732G0792 Papaver somniferum HOM05D000150 ORTHO05D000108 1.6e-06 57.0 45 53.3
THA.LOC104822956 Tarenaya hassleriana HOM05D000150 ORTHO05D000108 1.6e-06 57.0 45 57.8
arahy.Tifrunner.gnm1.ann1.IAPX52 Arachis hypogaea HOM05D000150 ORTHO05D000108 2.1e-06 56.6 44 54.5
MSTRG.7871 Avicennia marina HOM05D000150 ORTHO05D000108 2.1e-06 56.6 45 57.8
Nitab4.5_0008193g0040 Nicotiana tabacum HOM05D000150 ORTHO05D000108 2.1e-06 56.6 59 44.1
Sopen08g002310 Solanum pennellii HOM05D000150 ORTHO05D000108 2.1e-06 56.6 59 44.1
SGA_v2.0_scaffold166G38339 Striga asiatica HOM05D000150 ORTHO05D000108 2.1e-06 56.6 45 53.3
Thecc.01G207200 Theobroma cacao HOM05D000150 ORTHO05D000108 2.1e-06 56.6 34 61.8
DCAR_005973 Daucus carota HOM05D002515 ORTHO05D002722 2.7e-06 56.2 54 48.1
TAR629G0002 Trochodendron aralioides HOM05D000150 ORTHO05D000108 2.7e-06 56.2 33 63.6
Actinidia13143 Actinidia chinensis HOM05D002515 ORTHO05D002722 3.5e-06 55.8 55 45.5
EL10Ac6g13727 Beta vulgaris HOM05D000150 ORTHO05D000108 3.5e-06 55.8 34 64.7
Manes.01G196500 Manihot esculenta HOM05D000150 ORTHO05D000108 3.5e-06 55.8 34 64.7
Oeu001656.1 Olea europaea HOM05D000150 ORTHO05D000108 3.5e-06 55.8 45 51.1
Solyc08g006350.3 Solanum lycopersicum HOM05D000150 ORTHO05D000108 3.5e-06 55.8 59 45.8
Thecc.02G308400 Theobroma cacao HOM05D000150 ORTHO05D000108 3.5e-06 55.8 72 41.7
Ah.02g131570 Amaranthus hybridus HOM05D000150 ORTHO05D000108 4.6e-06 55.5 34 67.6
ATR0743G166 Amborella trichopoda HOM05D000150 ORTHO05D000108 4.6e-06 55.5 45 48.9
BcaC05g26304 Brassica carinata HOM05D000150 ORTHO05D000108 4.6e-06 55.5 43 55.8
BolC5t31022H Brassica oleracea HOM05D000150 ORTHO05D000108 4.6e-06 55.5 43 55.8
AUR62028637 Chenopodium quinoa HOM05D000150 ORTHO05D000108 4.6e-06 55.5 62 45.2
Cc11_g14210 Coffea canephora HOM05D000150 ORTHO05D000108 4.6e-06 55.5 45 55.6
ECA246G2568 Erigeron canadensis HOM05D000150 ORTHO05D000108 4.6e-06 55.5 54 48.1
Nitab4.5_0008193g0010 Nicotiana tabacum HOM05D000150 ORTHO05D000108 4.6e-06 55.5 61 42.6
Solyc08g006330.3 Solanum lycopersicum HOM05D000150 ORTHO05D000108 4.6e-06 55.5 59 44.1
Solyc08g006410.4 Solanum lycopersicum HOM05D000150 ORTHO05D000108 4.6e-06 55.5 59 44.1
Sopen08g002330 Solanum pennellii HOM05D000150 ORTHO05D000108 4.6e-06 55.5 59 44.1
TAR636G2365 Trochodendron aralioides HOM05D000150 ORTHO05D000108 4.6e-06 55.5 43 51.2
Aqoxy6G00198 Aquilegia oxysepala HOM05D000150 ORTHO05D000108 6.0e-06 55.1 60 50.0
A09p40790 Brassica napus HOM05D000150 ORTHO05D000108 6.0e-06 55.1 43 55.8
C05p23200 Brassica napus HOM05D000150 ORTHO05D000108 6.0e-06 55.1 43 55.8
BraA09t39573Z Brassica rapa HOM05D000150 ORTHO05D000108 6.0e-06 55.1 43 55.8
CANSAT54G1460 Cannabis sativa HOM05D002515 ORTHO05D002722 6.0e-06 55.1 53 49.1
CARHR024390 Cardamine hirsuta HOM05D000150 ORTHO05D000108 6.0e-06 55.1 30 70.0
Nitab4.5_0005722g0010 Nicotiana tabacum HOM05D000150 ORTHO05D000108 6.0e-06 55.1 45 55.6
Peaxi162Scf00421g00826 Petunia axillaris HOM05D000150 ORTHO05D000108 6.0e-06 55.1 45 55.6
Sp1g21430 Schrenkiella parvula HOM05D000150 ORTHO05D000108 6.0e-06 55.1 46 56.5
TAR362G0749 Trochodendron aralioides HOM05D000150 ORTHO05D000108 6.0e-06 55.1 58 46.6
AL1G37910 Arabidopsis lyrata HOM05D000150 ORTHO05D000108 7.8e-06 54.7 43 55.8
AT1G24100 Arabidopsis thaliana HOM05D000150 ORTHO05D000108 7.8e-06 54.7 43 55.8
CSS0045393 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 7.8e-06 54.7 62 41.9
Eucgr.B02563 Eucalyptus grandis HOM05D000150 ORTHO05D000108 7.8e-06 54.7 44 56.8
FvH4_2g03300 Fragaria vesca HOM05D000150 ORTHO05D000108 7.8e-06 54.7 62 40.3
FAN20G0320 Fragaria x ananassa HOM05D000150 ORTHO05D000108 7.8e-06 54.7 62 40.3
FAN20G2863 Fragaria x ananassa HOM05D000150 ORTHO05D000108 7.8e-06 54.7 62 40.3
QL02p019353 Quercus lobata HOM05D000150 ORTHO05D000108 7.8e-06 54.7 34 58.8
QL10p058885 Quercus lobata HOM05D000150 ORTHO05D000108 7.8e-06 54.7 34 58.8
Sopen08g002350 Solanum pennellii HOM05D000150 ORTHO05D000108 7.8e-06 54.7 59 44.1
TAR636G0262 Trochodendron aralioides HOM05D000150 ORTHO05D000108 7.8e-06 54.7 52 40.4
VMungo0251G3120 Vigna mungo HOM05D000150 ORTHO05D000108 7.8e-06 54.7 51 41.2


User provided reference genes

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