Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.9e-149 531.6 291 100.0
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.5e-142 508.4 296 95.9
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 8.5e-112 407.5 302 77.2
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.9e-111 406.4 300 78.7
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.5e-104 381.3 299 77.9
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 8.5e-104 380.9 305 77.0
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 5.5e-103 378.3 306 74.5
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 3.0e-101 372.5 296 75.7
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 5.7e-100 368.2 300 74.0
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 2.8e-99 365.9 294 75.5
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.8e-99 365.2 297 72.7
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 4.8e-99 365.2 293 73.7
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.1e-98 364.0 294 74.1
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 5.3e-98 361.7 295 71.5
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.5e-97 359.0 290 73.8
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 3.5e-97 359.0 293 72.7
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.0e-96 357.5 302 71.9
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 1.0e-96 357.5 294 70.7
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 1.3e-96 357.1 302 71.9
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.7e-96 356.7 299 73.2
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.2e-96 356.3 293 70.6
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 6.5e-96 354.8 302 71.2
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 8.5e-96 354.4 297 71.4
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.4e-95 353.6 297 70.4
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 7.2e-95 351.3 298 71.1
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 9.4e-95 350.9 296 69.9
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 9.4e-95 350.9 290 72.1
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 1.6e-94 350.1 294 70.7
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.6e-94 350.1 296 70.3
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 4.7e-94 348.6 302 68.9
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 4.7e-94 348.6 288 72.9
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 6.1e-94 348.2 294 70.1
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.1e-94 348.2 298 69.8
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 8.0e-94 347.8 209 87.1
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 1.0e-93 347.4 304 68.4
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 3.0e-93 345.9 300 71.3
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 3.9e-93 345.5 277 75.5
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 6.7e-93 344.7 302 70.2
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 6.7e-93 344.7 304 68.1
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 6.7e-93 344.7 299 68.9
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 8.8e-93 344.4 290 73.1
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 8.8e-93 344.4 294 69.7
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.5e-92 343.6 299 70.9
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 3.3e-92 342.4 293 70.6
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 3.3e-92 342.4 297 68.4
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.3e-92 342.4 295 69.8
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 4.4e-92 342.0 294 69.0
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 9.7e-92 340.9 295 69.5
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 9.7e-92 340.9 294 70.1
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.7e-91 340.1 301 69.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 1.7e-91 340.1 293 68.9
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 2.8e-91 339.3 294 69.4
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.7e-91 339.0 297 68.0
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 6.3e-91 338.2 295 69.5
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 8.2e-91 337.8 307 67.8
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 1.1e-90 337.4 293 67.9
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.4e-90 337.0 297 70.0
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 3.1e-90 335.9 307 69.1
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.1e-90 335.9 293 68.9
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 4.1e-90 335.5 293 71.0
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 5.3e-90 335.1 307 67.4
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 5.3e-90 335.1 294 69.7
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 9.1e-90 334.3 300 67.3
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.6e-89 333.6 298 66.8
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.6e-89 333.6 295 68.5
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 2.0e-89 333.2 295 70.2
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.5e-89 332.4 298 66.8
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 3.5e-89 332.4 300 68.7
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 4.5e-89 332.0 298 69.1
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.9e-89 331.6 298 67.1
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 1.3e-88 330.5 295 70.5
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.7e-88 330.1 294 67.3
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 2.9e-88 329.3 296 67.9
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.8e-88 328.9 301 67.4
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 3.8e-88 328.9 295 69.8
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.8e-88 328.9 296 67.9
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 5.0e-88 328.6 309 64.7
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.1e-87 327.4 294 68.4
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.5e-87 327.0 302 66.9
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 1.5e-87 327.0 297 66.7
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.2e-87 325.9 299 67.2
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 5.5e-87 325.1 297 67.3
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 5.5e-87 325.1 293 67.6
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 9.4e-87 324.3 263 71.5
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.2e-86 323.9 295 65.4
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 1.2e-86 323.9 296 68.2
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 6.1e-86 321.6 299 65.2
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 1.8e-85 320.1 308 65.6
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 1.8e-85 320.1 263 70.7
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 8.8e-85 317.8 302 65.2
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.2e-84 317.4 296 66.6
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 1.5e-84 317.0 309 66.0
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 2.0e-84 316.6 253 73.1
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 9.7e-84 314.3 350 58.0
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.7e-83 312.4 293 65.5
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.3e-83 311.6 364 58.0
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.1e-82 310.8 304 64.5
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.4e-82 309.7 195 82.1
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.1e-82 309.3 341 60.4
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 4.1e-82 308.9 195 83.6
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 1.2e-81 307.4 301 63.5
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 1.6e-81 307.0 308 62.0
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 2.7e-81 306.2 304 61.8
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 2.7e-81 306.2 293 64.8
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.7e-81 306.2 303 63.7
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 5.9e-81 305.1 302 62.6
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 5.9e-81 305.1 285 64.2
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 5.9e-81 305.1 289 63.7
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 7.7e-81 304.7 302 63.6
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 7.7e-81 304.7 300 63.0
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 7.7e-81 304.7 300 63.0
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 7.7e-81 304.7 302 61.9
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 7.7e-81 304.7 295 63.7
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.0e-80 304.3 289 63.7
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 8.5e-80 301.2 266 67.3
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.5e-79 300.4 363 55.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.9e-79 300.1 306 61.8
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 1.9e-79 300.1 303 62.0
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 3.2e-79 299.3 305 61.6
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 2.1e-78 296.6 299 61.9
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 2.7e-78 296.2 284 65.8
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 3.6e-78 295.8 304 61.8
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 8.0e-78 294.7 301 62.5
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 1.5e-76 290.4 299 61.9
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 2.6e-76 289.7 284 62.7
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.3e-75 287.3 290 58.6
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.2e-75 286.6 193 80.8
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.4e-74 283.1 293 57.7
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 9.1e-74 281.2 281 63.7
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 1.0e-72 277.7 182 79.1
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.3e-72 276.6 267 62.5
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.5e-71 273.9 210 70.5
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 8.0e-70 268.1 291 59.1
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.0e-69 267.7 200 71.5
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.0e-69 267.7 229 67.2
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.2e-68 264.2 202 69.8
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 4.4e-68 262.3 252 64.3
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.3e-67 260.8 258 62.8
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 4.9e-67 258.8 268 58.6
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 8.3e-67 258.1 343 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 1.8e-66 256.9 224 62.5
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 2.3e-64 250.0 261 59.0
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.2e-62 244.2 266 59.4
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.1e-58 231.1 315 50.2
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 4.3e-55 219.2 203 62.1
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 7.3e-55 218.4 181 63.5
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.4e-50 204.1 210 60.5
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.6e-49 199.1 192 63.0
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 5.6e-47 192.2 186 58.1
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.2e-38 164.5 107 85.0
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.9e-34 150.6 89 82.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 2.1e-33 147.1 283 38.9
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.3e-31 138.7 104 69.2
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.1e-29 134.8 271 37.6
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 3.9e-24 116.3 197 40.6
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.9e-23 114.0 77 83.1
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.5e-23 113.6 122 54.9
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 4.3e-23 112.8 242 36.0
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 1.1e-21 108.2 87 64.4
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-21 108.2 63 85.7
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 3.1e-21 106.7 63 84.1
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 1.6e-14 84.3 246 30.1
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 2.9e-11 73.6 60 66.7


User provided reference genes

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