Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.3e-82 307.0 156 100.0
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.4e-76 288.9 173 87.9
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.8e-67 257.7 187 75.9
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.3e-63 245.7 162 81.5
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.7e-63 243.8 156 84.0
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.6e-62 240.4 151 85.4
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.6e-53 213.0 156 75.0
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 5.3e-28 128.3 81 81.5
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.0e-14 83.2 44 93.2
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.0e-14 83.2 44 93.2
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 2.8e-13 79.3 54 72.2
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 3.7e-13 79.0 54 74.1
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 4.8e-13 78.6 45 80.0
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 1.4e-12 77.0 44 79.5
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 1.4e-12 77.0 48 70.8
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 2.4e-12 76.3 54 72.2
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.1e-12 75.5 43 86.0
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 5.3e-12 75.1 44 77.3
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 9.1e-12 74.3 44 77.3
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 9.1e-12 74.3 44 77.3
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 9.1e-12 74.3 44 77.3
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 9.1e-12 74.3 44 77.3
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 1.2e-11 73.9 44 77.3
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 1.2e-11 73.9 45 77.8
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 1.2e-11 73.9 44 77.3
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 1.2e-11 73.9 42 81.0
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 72.7
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 72.7
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 72.7
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 72.7
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 77.3
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 2.0e-11 73.2 47 70.2
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 72.7
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 72.7
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 2.0e-11 73.2 44 72.7
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 2.0e-11 73.2 43 81.4
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.6e-11 72.8 43 83.7
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.6e-11 72.8 44 75.0
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.6e-11 72.8 44 75.0
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 75.0
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 3.5e-11 72.4 44 77.3
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 4.5e-11 72.0 44 75.0
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 4.5e-11 72.0 44 70.5
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 4.5e-11 72.0 44 75.0
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 4.5e-11 72.0 42 81.0
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 5.9e-11 71.6 42 81.0
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 5.9e-11 71.6 44 75.0
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 5.9e-11 71.6 44 75.0
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 7.7e-11 71.2 44 75.0
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 7.7e-11 71.2 44 75.0
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 7.7e-11 71.2 44 75.0
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 7.7e-11 71.2 55 67.3
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 7.7e-11 71.2 44 72.7
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 7.7e-11 71.2 44 72.7
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 1.0e-10 70.9 44 72.7
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 1.0e-10 70.9 44 75.0
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 1.3e-10 70.5 44 70.5
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 1.3e-10 70.5 54 68.5
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 1.3e-10 70.5 54 68.5
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 1.7e-10 70.1 44 79.5
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 3.8e-10 68.9 44 72.7
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 5.0e-10 68.6 44 72.7
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 5.0e-10 68.6 44 70.5
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 6.5e-10 68.2 42 73.8
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 6.5e-10 68.2 42 73.8
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 6.5e-10 68.2 49 63.3
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 6.5e-10 68.2 44 70.5
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 1.1e-09 67.4 45 66.7
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 1.5e-09 67.0 43 67.4
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 1.9e-09 66.6 45 73.3
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 2.5e-09 66.2 43 65.1
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 2.5e-09 66.2 44 68.2
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 4.2e-09 65.5 55 63.6
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 5.5e-09 65.1 40 70.0
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 5.5e-09 65.1 75 45.3
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 7.2e-09 64.7 46 69.6
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 9.4e-09 64.3 59 55.9
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.2e-08 63.9 35 82.9
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 1.2e-08 63.9 41 70.7
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 2.7e-08 62.8 50 58.0
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 4.7e-08 62.0 46 65.2
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 8.0e-08 61.2 64 54.7
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 8.0e-08 61.2 64 54.7
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 4.0e-07 58.9 43 62.8
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 8.8e-07 57.8 43 60.5
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 1.2e-06 57.4 55 50.9


User provided reference genes

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