Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044078 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 7.1e-75 283.9 146 100.0
CSS0044057 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 1.3e-63 246.5 145 89.0
CSS0024490 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 3.2e-59 231.9 147 85.0
CSS0017585 Camellia sinensis var. sinensis HOM05D005700 ORTHO05D007035 5.3e-54 214.5 168 70.8
Actinidia38892 Actinidia chinensis HOM05D005700 ORTHO05D007035 6.9e-54 214.2 147 76.9
Dinv31263 Davidia involucrata HOM05D005700 ORTHO05D007035 2.0e-53 212.6 148 79.1
Actinidia34788 Actinidia chinensis HOM05D005700 ORTHO05D007035 4.5e-53 211.5 147 76.2
Hma1.2p1_0454F.1_g156230 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 7.6e-53 210.7 147 76.2
vmacro10263 Vaccinium macrocarpon HOM05D005700 ORTHO05D007035 1.7e-52 209.5 147 76.9
ECA238G2005 Erigeron canadensis HOM05D005700 ORTHO05D007035 2.9e-52 208.8 147 74.1
Gohir.A05G393500 Gossypium hirsutum HOM05D005700 ORTHO05D007035 4.9e-52 208.0 147 73.5
Lj2A24T67 Lonicera japonica HOM05D005700 ORTHO05D007035 4.9e-52 208.0 148 75.7
Gorai.012G025500 Gossypium raimondii HOM05D005700 ORTHO05D007035 8.4e-52 207.2 148 73.6
PGSC0003DMG400023376 Solanum tuberosum HOM05D005700 ORTHO05D007035 1.1e-51 206.8 147 74.8
Haze_16777 Corylus avellana HOM05D005700 ORTHO05D007035 1.4e-51 206.5 147 74.8
HanXRQChr14g0456161 Helianthus annuus HOM05D005700 ORTHO05D007035 1.4e-51 206.5 148 74.3
Cfa001774 Carpinus fangiana HOM05D005700 ORTHO05D007035 1.9e-51 206.1 147 74.1
Migut.F01676 Erythranthe guttata HOM05D005700 ORTHO05D007035 2.4e-51 205.7 147 72.8
Sopen05g033880 Solanum pennellii HOM05D005700 ORTHO05D007035 3.2e-51 205.3 147 74.1
Gohir.D04G021400 Gossypium hirsutum HOM05D005700 ORTHO05D007035 4.2e-51 204.9 147 72.8
Nn3g19086 Nelumbo nucifera HOM05D005700 ORTHO05D007035 4.2e-51 204.9 145 74.5
Duzib106G0901 Durio zibethinus HOM05D005700 ORTHO05D007035 5.5e-51 204.5 149 71.8
Manes.11G085375 Manihot esculenta HOM05D005700 ORTHO05D007035 5.5e-51 204.5 147 73.5
Peaxi162Scf01201g00017 Petunia axillaris HOM05D005700 ORTHO05D007035 5.5e-51 204.5 147 74.1
CiPaw.01G265100 Carya illinoinensis HOM05D005700 ORTHO05D007035 9.3e-51 203.8 147 74.1
Oeu046658.1 Olea europaea HOM05D005700 ORTHO05D007035 9.3e-51 203.8 149 70.5
RcHm_v2.0_Chr1g0336111 Rosa chinensis HOM05D005700 ORTHO05D007035 1.2e-50 203.4 147 72.8
Atru.chr12.910 Acer truncatum HOM05D005700 ORTHO05D007035 1.6e-50 203.0 147 72.8
CAN.G1891.6 Capsicum annuum HOM05D005700 ORTHO05D007035 2.1e-50 202.6 147 72.8
CiPaw.02G170000 Carya illinoinensis HOM05D005700 ORTHO05D007035 2.1e-50 202.6 147 72.8
Prupe.2G094500 Prunus persica HOM05D005700 ORTHO05D007035 2.1e-50 202.6 146 73.3
Ciclev10032582m.g Citrus clementina HOM05D005700 ORTHO05D007035 2.7e-50 202.2 147 70.1
Sc20g0001510 Simmondsia chinensis HOM05D005700 ORTHO05D007035 6.0e-50 201.1 147 71.4
Solyc05g055430.4 Solanum lycopersicum HOM05D005700 ORTHO05D007035 6.0e-50 201.1 147 73.5
TAR369G0971 Trochodendron aralioides HOM05D005700 ORTHO05D007035 6.0e-50 201.1 146 74.0
GSVIVG01016163001 Vitis vinifera HOM05D005700 ORTHO05D007035 6.0e-50 201.1 147 71.4
FvH4_7g06650 Fragaria vesca HOM05D005700 ORTHO05D007035 7.9e-50 200.7 145 72.4
Potri.010G230900 Populus trichocarpa HOM05D005700 ORTHO05D007035 7.9e-50 200.7 147 70.7
THA.LOC104823196 Tarenaya hassleriana HOM05D005700 ORTHO05D007035 7.9e-50 200.7 147 72.8
SalBow6G6710 Salvia bowleyana HOM05D005700 ORTHO05D007035 1.0e-49 200.3 147 71.4
Sabra10G0179000 Salix brachista HOM05D005700 ORTHO05D007035 3.0e-49 198.7 147 70.1
Lsat_1_v5_gn_2_103220 Lactuca sativa HOM05D005700 ORTHO05D007035 3.9e-49 198.4 145 73.1
Thecc.10G089800 Theobroma cacao HOM05D005700 ORTHO05D007035 3.9e-49 198.4 145 71.0
HanXRQChr11g0335951 Helianthus annuus HOM05D005700 ORTHO05D007035 5.1e-49 198.0 147 70.7
COL.COLO4_32883 Corchorus olitorius HOM05D005700 ORTHO05D007035 6.7e-49 197.6 146 72.6
Thhalv10014494m.g Eutrema salsugineum HOM05D005700 ORTHO05D007035 6.7e-49 197.6 145 71.7
Aa31LG11G5310 Aethionema arabicum HOM05D005700 ORTHO05D007035 8.7e-49 197.2 144 71.5
BcaC06g32152 Brassica carinata HOM05D005700 ORTHO05D007035 8.7e-49 197.2 145 71.7
Potri.008G030300 Populus trichocarpa HOM05D005700 ORTHO05D007035 8.7e-49 197.2 147 69.4
Nn6g35199 Nelumbo nucifera HOM05D005700 ORTHO05D007035 1.1e-48 196.8 147 70.7
QL08p053081 Quercus lobata HOM05D005700 ORTHO05D007035 1.5e-48 196.4 147 71.4
AT5G04440 Arabidopsis thaliana HOM05D005700 ORTHO05D007035 1.9e-48 196.1 145 70.3
PSO339G4237 Papaver somniferum HOM05D005700 ORTHO05D007035 1.9e-48 196.1 145 71.7
Sp6g38300 Schrenkiella parvula HOM05D005700 ORTHO05D007035 1.9e-48 196.1 145 71.0
PSO063G2079 Papaver somniferum HOM05D005700 ORTHO05D007035 2.5e-48 195.7 145 71.7
A10p31640 Brassica napus HOM05D005700 ORTHO05D007035 3.3e-48 195.3 145 71.0
BraA10t45210Z Brassica rapa HOM05D005700 ORTHO05D007035 3.3e-48 195.3 145 71.0
Aqoxy1G01068 Aquilegia oxysepala HOM05D005700 ORTHO05D007035 4.3e-48 194.9 147 72.8
PGR142G0169 Punica granatum HOM05D005700 ORTHO05D007035 4.3e-48 194.9 147 69.4
MSTRG.400 Avicennia marina HOM05D005700 ORTHO05D007035 5.6e-48 194.5 147 68.7
Cpa.g.sc53.169 Carica papaya HOM05D005700 ORTHO05D007035 7.4e-48 194.1 147 69.4
MD07G1074500 Malus domestica HOM05D005700 ORTHO05D007035 7.4e-48 194.1 146 71.9
AL6G14080 Arabidopsis lyrata HOM05D005700 ORTHO05D007035 1.6e-47 193.0 145 69.7
Cc02_g10560 Coffea canephora HOM05D005700 ORTHO05D007035 1.6e-47 193.0 147 70.7
Carub.0006s0338 Capsella rubella HOM05D005700 ORTHO05D007035 2.1e-47 192.6 144 69.4
Hma1.2p1_0454F.1_g156240 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 2.8e-47 192.2 177 62.7
Lalb_Chr01g0010291 Lupinus albus HOM05D005700 ORTHO05D007035 3.7e-47 191.8 147 67.3
ATR0043G051 Amborella trichopoda HOM05D005700 ORTHO05D007035 6.2e-47 191.0 145 70.3
Sed0026830 Sechium edule HOM05D005700 ORTHO05D007035 1.8e-46 189.5 147 69.4
EL10Ac4g08634 Beta vulgaris HOM05D005700 ORTHO05D007035 5.3e-46 188.0 147 66.7
Rhsim09G0145300 Rhododendron simsii HOM05D005700 ORTHO05D007035 6.9e-46 187.6 202 55.9
Sed0005120 Sechium edule HOM05D005700 ORTHO05D007035 6.9e-46 187.6 147 68.0
Ca_26010_v3 Cicer arietinum L. HOM05D005700 ORTHO05D007035 1.2e-45 186.8 147 67.3
Zm00001eb003780 Zea mays HOM05D005700 ORTHO05D007035 1.2e-45 186.8 146 66.4
Medtr1g050530 Medicago truncatula HOM05D005700 ORTHO05D007035 1.5e-45 186.4 147 67.3
Phvul.007G244000 Phaseolus vulgaris HOM05D005700 ORTHO05D007035 1.5e-45 186.4 147 66.7
Nitab4.5_0000096g0200 Nicotiana tabacum HOM05D005700 ORTHO05D007035 2.0e-45 186.0 177 61.6
FAN03G2335 Fragaria x ananassa HOM05D005700 ORTHO05D007035 2.6e-45 185.7 174 60.3
FAN10G0584 Fragaria x ananassa HOM05D005700 ORTHO05D007035 2.6e-45 185.7 174 60.3
CANSAT56G1373 Cannabis sativa HOM05D005700 ORTHO05D007035 5.8e-45 184.5 148 68.9
Psat6g095240 Pisum sativum HOM05D005700 ORTHO05D007035 7.6e-45 184.1 147 66.0
VMungo0720G2730 Vigna mungo HOM05D005700 ORTHO05D007035 1.0e-44 183.7 145 65.5
Lj1g0010858 Lotus japonicus HOM05D005700 ORTHO05D007035 1.7e-44 183.0 147 64.6
CDE09G1384 Ceratophyllum demersum HOM05D005700 ORTHO05D007035 2.9e-44 182.2 145 66.2
Glyma.10G102440 Glycine max HOM05D005700 ORTHO05D007035 8.4e-44 180.6 145 66.9
Glyma.U031112 Glycine max HOM05D005700 ORTHO05D007035 8.4e-44 180.6 145 66.9
Lj1g0018185 Lotus japonicus HOM05D005700 ORTHO05D007035 1.1e-43 180.3 146 64.4
C09p72310 Brassica napus HOM05D005700 ORTHO05D007035 1.2e-42 176.8 136 69.1
BolC9t59975H Brassica oleracea HOM05D005700 ORTHO05D007035 1.2e-42 176.8 136 69.1
TWI38G0818 Tripterygium wilfordii HOM05D005700 ORTHO05D007035 2.7e-42 175.6 133 69.2
HPP92_004967 Vanilla planifolia HOM05D005700 ORTHO05D007035 2.7e-42 175.6 147 61.9
SMO196G0037 Selaginella moellendorffii HOM05D005700 ORTHO05D007035 3.5e-42 175.3 145 64.8
ClCG08G007920 Citrullus lanatus HOM05D005700 ORTHO05D007035 4.6e-42 174.9 169 59.2
MELO3C019851.2 Cucumis melo HOM05D005700 ORTHO05D007035 4.6e-42 174.9 179 56.4
Hund06763 Selenicereus undatus HOM05D005700 ORTHO05D007035 5.7e-40 167.9 236 45.3
SGA_v2.0_scaffold41G15744 Striga asiatica HOM05D005700 ORTHO05D007035 1.0e-36 157.1 213 46.0
Mapoly0083s0065 Marchantia polymorpha HOM05D005700 ORTHO05D007035 1.1e-35 153.7 145 59.3
AagrBONN_evm.TU.Sc2ySwM_228.955 Anthoceros agrestis HOM05D005700 ORTHO05D007035 5.5e-35 151.4 146 54.8
Pp3c1_19240 Physcomitrium patens HOM05D005700 ORTHO05D007035 7.2e-35 151.0 145 55.2
arahy.Tifrunner.gnm1.ann1.U7ZK73 Arachis hypogaea HOM05D005700 ORTHO05D007035 9.1e-30 134.0 223 42.2
CBR_g10878 Chara braunii HOM05D005700 ORTHO05D007035 1.2e-29 133.7 141 52.5
MBI11_g29032_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 1.3e-28 130.2 143 53.1
FAN10G1117 Fragaria x ananassa HOM05D005700 ORTHO05D007035 1.0e-25 120.6 81 74.1
Sabra08G0020300 Salix brachista HOM05D000437 ORTHO05D000324 1.0e-25 120.6 77 77.9
CARHR208820 Cardamine hirsuta HOM05D005700 ORTHO05D007035 3.9e-25 118.6 77 76.6
Nitab4.5_0002692g0080 Nicotiana tabacum HOM05D005700 ORTHO05D007035 6.7e-25 117.9 77 77.9
PRCOL_00003535 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 2.0e-24 116.3 145 42.8
CsaV3_2G032730 Cucumis sativus L. HOM05D005700 ORTHO05D007035 2.2e-23 112.8 77 72.7
Os03g0146500 Oryza sativa ssp. japonica HOM05D005700 ORTHO05D007035 8.2e-23 110.9 78 71.8
Glyma.02G164300 Glycine max HOM05D005700 ORTHO05D007035 1.1e-22 110.5 78 70.5
arahy.Tifrunner.gnm1.ann1.D7GKH1 Arachis hypogaea HOM05D005700 ORTHO05D007035 2.0e-21 106.3 80 66.2
Hma1.2p1_1040F.1_g250960 Hydrangea macrophylla HOM05D005700 ORTHO05D007035 2.9e-20 102.4 77 71.4
C03p02060 Brassica napus HOM05D005700 ORTHO05D007035 5.0e-20 101.7 103 58.3
BolC3t12759H Brassica oleracea HOM05D005700 ORTHO05D007035 8.5e-20 100.9 143 45.5
Cre06.g264550 Chlamydomonas reinhardtii HOM05D005700 ORTHO05D007035 9.4e-19 97.4 166 38.6
SEGI_20571 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 3.9e-17 92.0 67 70.1
MBI19_g03561_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 7.4e-16 87.8 70 65.7
AUR62022764 Chenopodium quinoa HOM05D005700 ORTHO05D007035 6.3e-15 84.7 70 64.3
AUR62029215 Chenopodium quinoa HOM05D005700 ORTHO05D007035 8.2e-15 84.3 70 64.3
BcaB01g05899 Brassica carinata HOM05D005700 ORTHO05D007035 2.4e-14 82.8 68 64.7
MCO14G381 Micromonas commoda HOM05D005700 ORTHO05D007035 2.4e-14 82.8 149 36.2
arahy.Tifrunner.gnm1.ann1.PLH1MA Arachis hypogaea HOM05D005700 ORTHO05D007035 3.1e-14 82.4 68 69.1
A03p01690 Brassica napus HOM05D005700 ORTHO05D007035 2.0e-13 79.7 66 63.6
BcaB01g05900 Brassica carinata HOM05D005700 ORTHO05D007035 1.3e-12 77.0 67 62.7
MBI11_g23276_MAGBIO Magnolia biondii HOM05D005700 ORTHO05D007035 1.3e-12 77.0 67 61.2
unitig_749.g13568 Utricularia gibba HOM05D005700 ORTHO05D007035 3.8e-12 75.5 70 58.6
BraA03t09544Z Brassica rapa HOM05D005700 ORTHO05D007035 8.5e-12 74.3 66 60.6
Zm00001eb006030 Zea mays HOM05D005700 ORTHO05D007035 1.2e-10 70.5 74 56.8
Zm00001eb313560 Zea mays HOM05D005700 ORTHO05D007035 2.1e-10 69.7 77 51.9
SEGI_13772 Sequoiadendron giganteum HOM05D005700 ORTHO05D007035 1.0e-09 67.4 68 57.4
Sp7g28990 Schrenkiella parvula HOM05D006909 ORTHO05D008682 1.8e-09 66.6 153 28.8
Sopen08g023090 Solanum pennellii HOM05D006909 ORTHO05D008682 1.8e-09 66.6 133 32.3
SEGI_25566 Sequoiadendron giganteum HOM05D006909 ORTHO05D008682 2.3e-09 66.2 151 29.8
Solyc08g074450.3 Solanum lycopersicum HOM05D006909 ORTHO05D008682 3.0e-09 65.9 133 30.8
BcaNung01544 Brassica carinata HOM05D006909 ORTHO05D008682 5.2e-09 65.1 154 27.3
TAR383G0789 Trochodendron aralioides HOM05D006909 ORTHO05D008682 5.2e-09 65.1 151 27.8
Aa31LG2G19230 Aethionema arabicum HOM05D006909 ORTHO05D008682 6.7e-09 64.7 154 27.3
PRCOL_00001490 Prasinoderma coloniale HOM05D005700 ORTHO05D007035 6.7e-09 64.7 145 28.3
Carub.0007s0942 Capsella rubella HOM05D006909 ORTHO05D008682 8.8e-09 64.3 153 27.5
PGSC0003DMG402029598 Solanum tuberosum HOM05D006909 ORTHO05D008682 1.2e-08 63.9 133 31.6
DCAR_000695 Daucus carota HOM05D006909 ORTHO05D008682 1.5e-08 63.5 152 28.9
Nitab4.5_0004102g0010 Nicotiana tabacum HOM05D006909 ORTHO05D008682 1.5e-08 63.5 133 30.8
A03p60540 Brassica napus HOM05D006909 ORTHO05D008682 2.0e-08 63.2 153 27.5
C07p58450 Brassica napus HOM05D006909 ORTHO05D008682 2.0e-08 63.2 153 27.5
BraA03t15093Z Brassica rapa HOM05D006909 ORTHO05D008682 2.0e-08 63.2 153 27.5
vmacro09260 Vaccinium macrocarpon HOM05D006909 ORTHO05D008682 2.0e-08 63.2 151 29.1
BcaNung02722 Brassica carinata HOM05D006909 ORTHO05D008682 2.6e-08 62.8 153 27.5
BolC7t46299H Brassica oleracea HOM05D006909 ORTHO05D008682 2.6e-08 62.8 153 27.5
Ciclev10009318m.g Citrus clementina HOM05D006909 ORTHO05D008682 2.6e-08 62.8 153 26.1
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 3.3e-08 62.4 135 29.6
Lj5g0027238 Lotus japonicus HOM05D006909 ORTHO05D008682 3.3e-08 62.4 151 25.8
Nitab4.5_0004792g0040 Nicotiana tabacum HOM05D006909 ORTHO05D008682 4.4e-08 62.0 133 30.8
Potri.005G179800 Populus trichocarpa HOM05D006909 ORTHO05D008682 4.4e-08 62.0 152 28.9
Actinidia25726 Actinidia chinensis HOM05D006909 ORTHO05D008682 7.5e-08 61.2 151 26.5
AL7G20960 Arabidopsis lyrata HOM05D006909 ORTHO05D008682 7.5e-08 61.2 154 27.9
AT4G31115 Arabidopsis thaliana HOM05D006909 ORTHO05D008682 7.5e-08 61.2 153 28.8
CARHR239020 Cardamine hirsuta HOM05D006909 ORTHO05D008682 7.5e-08 61.2 153 27.5
CAN.G195.13 Capsicum annuum HOM05D006909 ORTHO05D008682 9.7e-08 60.8 133 30.1
ECA233G6102 Erigeron canadensis HOM05D005700 ORTHO05D007035 9.7e-08 60.8 64 56.2
HPP92_015794 Vanilla planifolia HOM05D006909 ORTHO05D008682 9.7e-08 60.8 153 28.1
Nn8g41256 Nelumbo nucifera HOM05D006909 ORTHO05D008682 1.3e-07 60.5 135 29.6
AUR62020694 Chenopodium quinoa HOM05D006909 ORTHO05D008682 1.7e-07 60.1 153 29.4
Thhalv10026012m.g Eutrema salsugineum HOM05D006909 ORTHO05D008682 2.2e-07 59.7 153 26.8
HPP92_015785 Vanilla planifolia HOM05D006909 ORTHO05D008682 2.2e-07 59.7 153 27.5
Peaxi162Scf00213g01514 Petunia axillaris HOM05D006909 ORTHO05D008682 2.8e-07 59.3 133 28.6
Cc01_g06550 Coffea canephora HOM05D006909 ORTHO05D008682 6.3e-07 58.2 151 27.8
Dinv37475 Davidia involucrata HOM05D006909 ORTHO05D008682 6.3e-07 58.2 153 26.1
Manes.02G165700 Manihot esculenta HOM05D006909 ORTHO05D008682 6.3e-07 58.2 133 30.8
FvH4_4g12330 Fragaria vesca HOM05D006909 ORTHO05D008682 8.2e-07 57.8 133 30.8
Oeu027782.1 Olea europaea HOM05D006909 ORTHO05D008682 8.2e-07 57.8 135 30.4
Thecc.09G001700 Theobroma cacao HOM05D006909 ORTHO05D008682 1.1e-06 57.4 151 25.8
CSS0024909 Camellia sinensis var. sinensis HOM05D006909 ORTHO05D008682 1.4e-06 57.0 151 26.5
HanXRQChr06g0174091 Helianthus annuus HOM05D006909 ORTHO05D008682 1.4e-06 57.0 133 28.6
CsaV3_2G031550 Cucumis sativus L. HOM05D006909 ORTHO05D008682 1.8e-06 56.6 133 29.3
FAN12G0257 Fragaria x ananassa HOM05D006909 ORTHO05D008682 1.8e-06 56.6 133 30.1
FAN12G1566 Fragaria x ananassa HOM05D006909 ORTHO05D008682 1.8e-06 56.6 133 30.1
SGA_v2.0_scaffold27G11701 Striga asiatica HOM05D006909 ORTHO05D008682 1.8e-06 56.6 153 26.8
CBR_g8618 Chara braunii HOM05D006909 ORTHO05D008682 2.4e-06 56.2 149 28.2
Sed0010876 Sechium edule HOM05D006909 ORTHO05D008682 2.4e-06 56.2 133 28.6
Psat6g031680 Pisum sativum HOM05D006909 ORTHO05D008682 3.1e-06 55.8 151 24.5
Gorai.009G069700 Gossypium raimondii HOM05D006909 ORTHO05D008682 5.3e-06 55.1 153 24.8
MSTRG.25805 Avicennia marina HOM05D006909 ORTHO05D008682 7.0e-06 54.7 133 28.6


User provided reference genes

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