Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.9e-60 234.6 115 100.0
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 4.3e-27 124.8 101 61.4
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 9.6e-27 123.6 118 56.8
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 2.1e-26 122.5 107 58.9
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.1e-25 120.2 109 58.7
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.8e-25 119.4 108 58.3
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.1e-25 118.6 104 57.7
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 5.3e-25 117.9 100 58.0
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.0e-24 115.9 106 56.6
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.6e-24 115.5 106 54.7
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 4.5e-24 114.8 110 54.5
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 5.9e-24 114.4 106 56.6
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.0e-23 113.6 100 56.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-23 112.5 107 57.9
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-23 112.5 107 57.9
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.2e-23 112.5 107 57.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 8.4e-23 110.5 120 51.7
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.4e-23 110.5 108 54.6
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.4e-22 109.8 96 60.4
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.4e-22 109.8 96 60.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.2e-22 108.2 109 55.0
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-21 106.7 108 51.9
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.6e-21 106.3 109 51.4
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.1e-21 105.9 103 56.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.7e-21 105.5 108 51.9
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.6e-21 104.8 107 53.3
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 6.1e-21 104.4 125 48.0
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 7.9e-21 104.0 96 53.1
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 7.9e-21 104.0 101 48.5
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.0e-20 103.6 98 53.1
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.8e-20 102.8 114 50.9
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 3.0e-20 102.1 99 50.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.0e-20 102.1 105 51.4
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 3.0e-20 102.1 106 50.9
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 5.1e-20 101.3 85 57.6
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 5.1e-20 101.3 85 57.6
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 8.7e-20 100.5 106 50.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 8.7e-20 100.5 106 50.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.5e-19 99.8 105 53.3
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 2.5e-19 99.0 99 50.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.3e-19 98.6 102 53.9
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.3e-19 98.6 104 47.1
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 4.3e-19 98.2 104 47.1
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.7e-19 97.8 61 73.8
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 5.7e-19 97.8 102 53.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 7.4e-19 97.4 93 51.6
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.3e-18 96.7 107 50.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.3e-18 96.7 102 52.9
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.6e-18 96.3 108 50.0
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-18 96.3 88 58.0
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.6e-18 96.3 106 47.2
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.8e-18 95.5 110 49.1
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.8e-18 95.5 110 49.1
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.7e-18 95.1 104 50.0
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 4.8e-18 94.7 102 52.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 6.3e-18 94.4 106 47.2
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 6.3e-18 94.4 104 51.9
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 8.2e-18 94.0 106 46.2
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 8.2e-18 94.0 106 49.1
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.4e-17 93.2 106 52.8
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.8e-17 92.8 107 50.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 4.1e-17 91.7 106 49.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.3e-17 91.3 105 46.7
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.3e-17 91.3 105 46.7
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 9.0e-17 90.5 105 45.7
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 9.0e-17 90.5 106 50.9
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 9.0e-17 90.5 106 50.9
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.2e-16 90.1 104 46.2
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-16 90.1 105 48.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.4e-16 88.6 82 52.4
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.4e-16 88.6 96 50.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 5.9e-16 87.8 112 46.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 7.7e-16 87.4 104 49.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 7.7e-16 87.4 64 60.9
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 7.7e-16 87.4 99 44.4
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 7.7e-16 87.4 103 46.6
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.3e-15 86.7 117 47.0
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.2e-15 85.9 93 50.5
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.9e-15 85.5 88 48.9
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.8e-15 85.1 106 42.5
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 5.0e-15 84.7 97 46.4
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 5.0e-15 84.7 96 46.9
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 5.0e-15 84.7 95 44.2
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 6.5e-15 84.3 94 47.9
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 6.5e-15 84.3 98 42.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 6.5e-15 84.3 98 42.9
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 8.5e-15 84.0 74 51.4
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.1e-14 83.6 104 45.2
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.1e-14 83.6 105 45.7
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.9e-14 82.8 98 41.8
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.9e-14 82.8 98 41.8
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.9e-14 82.8 105 43.8
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 2.5e-14 82.4 98 43.9
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.2e-14 82.0 94 45.7
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 4.2e-14 81.6 106 44.3
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 7.2e-14 80.9 98 46.9
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 9.4e-14 80.5 96 49.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.6e-13 79.7 101 43.6
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.6e-13 79.7 121 42.1
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.7e-13 79.0 98 39.8
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.7e-13 79.0 90 45.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 2.7e-13 79.0 106 43.4
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 3.6e-13 78.6 90 45.6
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.6e-13 78.6 93 45.2
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.6e-13 78.6 94 44.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 4.6e-13 78.2 121 41.3
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 6.1e-13 77.8 107 39.3
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 6.1e-13 77.8 90 45.6
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 6.1e-13 77.8 90 45.6
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.0e-12 77.0 110 39.1
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-12 77.0 90 44.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.0e-12 77.0 90 44.4
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.4e-12 76.6 107 41.1
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 1.4e-12 76.6 86 48.8
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.3e-12 75.9 91 49.5
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 5.1e-12 74.7 95 44.2
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 5.1e-12 74.7 101 43.6
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 8.8e-12 73.9 95 48.4
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.1e-11 73.6 99 42.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.1e-11 73.6 93 43.0
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.0e-11 72.8 101 38.6
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.0e-11 72.8 97 43.3
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.5e-11 72.4 91 45.1
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 3.3e-11 72.0 68 57.4
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 5.7e-11 71.2 68 45.6
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.7e-10 68.6 106 37.7
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.7e-10 68.6 110 43.6
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.8e-10 68.2 114 36.8
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 6.3e-10 67.8 114 36.8
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.2e-10 67.4 106 36.8
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.8e-09 66.2 101 36.6
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.1e-09 65.1 114 36.0
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 6.9e-09 64.3 109 36.7
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 9.1e-09 63.9 109 36.7
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.5e-08 61.6 96 44.8
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 6.5e-07 57.8 92 40.2
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 3.2e-06 55.5 77 41.6
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 4.2e-06 55.1 93 39.8
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 5.5e-06 54.7 104 32.7


User provided reference genes

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