Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 6.9e-59 230.3 108 100.0
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.2e-23 113.2 77 71.4
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.2e-23 113.2 77 71.4
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.3e-20 103.2 56 87.5
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.2e-20 102.4 55 87.3
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 4.8e-20 101.3 56 83.9
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 4.8e-20 101.3 74 68.9
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 4.8e-20 101.3 74 68.9
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 4.8e-20 101.3 74 68.9
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 6.3e-20 100.9 56 83.9
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 6.3e-20 100.9 56 83.9
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 1.1e-19 100.1 56 83.9
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 1.8e-19 99.4 56 82.1
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 1.8e-19 99.4 56 83.9
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 2.4e-19 99.0 74 66.2
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 2.4e-19 99.0 56 82.1
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 2.4e-19 99.0 57 80.7
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.4e-19 99.0 57 80.7
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 2.4e-19 99.0 64 70.3
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 3.1e-19 98.6 74 66.2
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 3.1e-19 98.6 56 82.1
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 3.1e-19 98.6 56 80.4
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 3.1e-19 98.6 56 83.9
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 4.1e-19 98.2 56 82.1
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 4.1e-19 98.2 56 80.4
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 5.3e-19 97.8 56 80.4
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 5.3e-19 97.8 56 83.9
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 6.9e-19 97.4 56 80.4
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 6.9e-19 97.4 57 78.9
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 6.9e-19 97.4 57 78.9
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 9.1e-19 97.1 56 80.4
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 9.1e-19 97.1 56 78.6
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 9.1e-19 97.1 64 71.9
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.2e-18 96.7 56 78.6
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.2e-18 96.7 56 80.4
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 2.0e-18 95.9 56 78.6
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.0e-18 95.9 56 78.6
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 2.0e-18 95.9 57 78.9
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 2.6e-18 95.5 57 77.2
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 4.5e-18 94.7 56 76.8
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 5.9e-18 94.4 56 78.6
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 5.9e-18 94.4 56 76.8
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 7.7e-18 94.0 56 76.8
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.0e-17 93.6 74 63.5
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.0e-17 93.6 56 76.8
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.0e-17 93.6 56 76.8
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 1.0e-17 93.6 56 78.6
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 1.0e-17 93.6 56 76.8
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 1.0e-17 93.6 56 76.8
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 1.3e-17 93.2 56 76.8
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.7e-17 92.8 56 75.0
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 1.7e-17 92.8 56 75.0
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.2e-17 92.4 56 75.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 2.2e-17 92.4 52 80.8
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 2.2e-17 92.4 58 74.1
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 2.9e-17 92.0 64 65.6
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 2.9e-17 92.0 56 76.8
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 2.9e-17 92.0 56 73.2
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 3.8e-17 91.7 56 75.0
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 3.8e-17 91.7 56 75.0
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 5.0e-17 91.3 56 75.0
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 5.0e-17 91.3 57 71.9
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 5.0e-17 91.3 57 71.9
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 5.0e-17 91.3 56 76.8
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 6.5e-17 90.9 56 73.2
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 6.5e-17 90.9 56 76.8
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 6.5e-17 90.9 56 73.2
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 6.5e-17 90.9 56 75.0
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 8.5e-17 90.5 56 73.2
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 8.5e-17 90.5 56 73.2
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 1.4e-16 89.7 56 75.0
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 1.9e-16 89.4 56 71.4
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 2.5e-16 89.0 56 75.0
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 2.5e-16 89.0 56 75.0
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 2.5e-16 89.0 56 75.0
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 3.2e-16 88.6 56 69.6
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 3.2e-16 88.6 56 69.6
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 3.2e-16 88.6 56 75.0
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 4.2e-16 88.2 56 71.4
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 5.5e-16 87.8 56 71.4
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 5.5e-16 87.8 56 71.4
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 5.5e-16 87.8 56 73.2
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 9.4e-16 87.0 56 75.0
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 9.4e-16 87.0 56 71.4
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 1.2e-15 86.7 51 76.5
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 1.6e-15 86.3 56 67.9
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 1.6e-15 86.3 57 70.2
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 3.6e-15 85.1 56 69.6
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 3.6e-15 85.1 54 74.1
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 3.6e-15 85.1 56 69.6
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 3.6e-15 85.1 56 69.6
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 4.7e-15 84.7 49 77.6
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 6.1e-15 84.3 56 69.6
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 8.0e-15 84.0 56 69.6
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 8.0e-15 84.0 56 69.6
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 2.3e-14 82.4 56 67.9
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 2.3e-14 82.4 56 67.9
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 2.3e-14 82.4 56 67.9
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 5.2e-14 81.3 56 67.9
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 5.2e-14 81.3 56 67.9
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 5.2e-14 81.3 56 67.9
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 6.7e-14 80.9 56 66.1
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 6.7e-14 80.9 56 66.1
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 6.7e-14 80.9 56 66.1
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 3.3e-13 78.6 56 67.9
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 8.2e-12 73.9 56 60.7
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 1.8e-11 72.8 57 63.2
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 1.2e-10 70.1 56 57.1
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 3.8e-09 65.1 43 74.4
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 1.9e-08 62.8 46 63.0


User provided reference genes

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