Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 3.2e-112 408.3 189 100.0
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.2e-111 406.4 188 100.0
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.1e-101 373.2 188 88.3
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 3.3e-101 371.7 188 86.7
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 3.3e-101 371.7 188 88.3
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 9.7e-101 370.2 188 86.7
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 1.7e-100 369.4 185 87.6
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 2.8e-100 368.6 188 88.3
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 3.7e-100 368.2 188 85.6
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 3.7e-100 368.2 188 88.3
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-100 368.2 188 85.6
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.7e-100 368.2 188 85.6
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 3.7e-100 368.2 188 86.2
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 3.7e-100 368.2 188 85.6
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 3.7e-100 368.2 186 87.1
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 4.8e-100 367.9 188 86.2
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 4.8e-100 367.9 188 87.2
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 1.1e-99 366.7 188 85.1
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-99 366.7 188 85.1
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.4e-99 366.3 188 86.7
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 2.4e-99 365.5 188 85.6
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 4.1e-99 364.8 188 87.8
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 7.0e-99 364.0 185 87.6
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 1.6e-98 362.8 188 86.2
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 1.6e-98 362.8 186 87.1
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.0e-98 362.5 188 85.1
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 2.0e-98 362.5 188 84.6
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 2.6e-98 362.1 188 85.1
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 3.5e-98 361.7 188 85.1
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 3.5e-98 361.7 188 84.6
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.5e-98 361.3 186 85.5
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 4.5e-98 361.3 188 84.6
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 4.5e-98 361.3 188 83.5
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 4.5e-98 361.3 188 85.1
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 5.9e-98 360.9 188 83.5
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 5.9e-98 360.9 188 86.2
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 7.7e-98 360.5 188 84.0
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 1.0e-97 360.1 188 84.0
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 1.7e-97 359.4 188 85.1
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.7e-97 359.4 188 83.0
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.7e-97 359.4 188 84.6
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 2.2e-97 359.0 188 83.0
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 2.9e-97 358.6 186 85.5
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.8e-97 358.2 188 83.0
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 3.8e-97 358.2 188 84.6
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 5.0e-97 357.8 188 83.0
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 5.0e-97 357.8 186 83.9
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 5.0e-97 357.8 188 83.0
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 6.5e-97 357.5 186 83.3
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 6.5e-97 357.5 188 84.0
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 6.5e-97 357.5 186 83.3
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 6.5e-97 357.5 186 84.4
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 6.5e-97 357.5 188 84.0
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 8.5e-97 357.1 188 84.6
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 8.5e-97 357.1 186 86.0
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.5e-96 356.3 188 82.4
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 1.9e-96 355.9 188 84.0
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 1.9e-96 355.9 177 89.3
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 1.9e-96 355.9 188 83.5
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.5e-96 355.5 188 85.1
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 2.5e-96 355.5 188 81.9
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 3.2e-96 355.1 184 87.0
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 4.2e-96 354.8 185 83.8
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 4.2e-96 354.8 177 89.3
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 5.5e-96 354.4 190 83.7
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 5.5e-96 354.4 188 84.6
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 7.2e-96 354.0 188 81.9
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 9.4e-96 353.6 184 85.3
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.2e-95 353.2 187 80.7
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 1.2e-95 353.2 187 80.7
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 2.1e-95 352.4 188 81.9
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 2.1e-95 352.4 187 80.7
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 2.1e-95 352.4 176 88.6
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 4.7e-95 351.3 188 80.9
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 8.0e-95 350.5 188 84.6
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.4e-94 349.7 187 80.2
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.4e-94 349.7 188 80.9
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.4e-94 349.7 186 81.7
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.8e-94 349.4 188 80.3
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.8e-94 349.4 186 84.4
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 1.8e-94 349.4 186 82.8
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.3e-94 349.0 188 79.8
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.0e-94 348.6 188 83.0
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 3.0e-94 348.6 188 80.3
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 3.0e-94 348.6 188 82.4
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 4.0e-94 348.2 187 82.4
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 5.2e-94 347.8 188 83.0
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 5.2e-94 347.8 188 83.0
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 5.2e-94 347.8 177 87.0
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 6.7e-94 347.4 186 82.3
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 2.0e-93 345.9 188 81.4
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 3.3e-93 345.1 187 81.3
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 4.4e-93 344.7 186 80.6
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 2.2e-92 342.4 186 79.6
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 2.8e-92 342.0 186 81.2
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 2.8e-92 342.0 188 78.2
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 3.7e-92 341.7 177 84.7
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 3.7e-92 341.7 240 70.0
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 4.8e-92 341.3 188 81.4
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 1.1e-91 340.1 186 80.1
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 1.4e-91 339.7 188 80.3
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 1.4e-91 339.7 188 80.3
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 1.8e-91 339.3 188 77.7
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 4.1e-91 338.2 188 80.3
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 7.0e-91 337.4 188 79.8
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 1.2e-90 336.7 188 79.8
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 1.2e-90 336.7 188 79.8
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 1.2e-90 336.7 195 75.9
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 2.7e-90 335.5 188 79.8
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 3.5e-90 335.1 188 79.3
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 4.5e-90 334.7 188 78.7
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 4.5e-90 334.7 188 79.3
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 5.9e-90 334.3 188 79.3
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 2.9e-89 332.0 184 81.0
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 8.5e-89 330.5 186 78.5
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 1.5e-88 329.7 185 79.5
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 6.8e-86 320.9 157 89.2
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 6.3e-84 314.3 157 90.4
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 8.3e-84 313.9 271 56.8
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 2.7e-82 308.9 174 80.5
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 3.8e-81 305.1 161 88.2
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 1.1e-80 303.5 145 93.8
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 3.3e-80 302.0 148 89.9
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 5.5e-80 301.2 152 86.2
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 5.5e-80 301.2 179 75.4
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.8e-79 298.9 147 88.4
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 3.6e-79 298.5 145 91.7
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.4e-78 296.6 142 91.5
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 3.0e-78 295.4 151 88.1
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 3.0e-78 295.4 142 93.0
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 5.2e-78 294.7 146 87.7
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 8.9e-78 293.9 158 82.9
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 1.5e-77 293.1 151 87.4
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 1.5e-77 293.1 151 87.4
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 2.6e-77 292.4 146 89.0
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 2.6e-77 292.4 151 87.4
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 2.6e-77 292.4 146 89.0
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 3.4e-77 292.0 160 83.1
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 5.7e-77 291.2 143 88.8
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 1.3e-76 290.0 146 87.0
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.9e-76 288.1 141 92.2
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 2.1e-71 272.7 180 67.2
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 4.9e-68 261.5 178 62.9
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 7.0e-67 257.7 154 72.7
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 8.6e-65 250.8 184 59.8
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 1.2e-63 246.9 116 93.1
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.8e-62 243.0 116 91.4
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 6.8e-62 241.1 116 89.7
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 8.9e-62 240.7 150 75.3
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 3.4e-61 238.8 116 87.9
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.9e-60 235.7 115 89.6
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.7e-58 229.2 142 76.1
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 2.0e-53 213.0 116 81.0
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 4.4e-53 211.8 107 84.1
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 9.2e-43 177.6 88 85.2
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 1.7e-33 146.7 131 57.3
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 6.6e-33 144.8 131 58.0
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 4.3e-32 142.1 100 67.0
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 5.6e-32 141.7 100 67.0
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 9.6e-32 141.0 191 37.7
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 8.7e-25 117.9 103 57.3
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 2.5e-24 116.3 75 68.0
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 7.4e-24 114.8 72 70.8
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 1.3e-23 114.0 72 69.4
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 6.9e-22 108.2 72 68.1
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 3.1e-14 82.8 153 30.7
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 9.0e-14 81.3 58 63.8
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 1.2e-10 70.9 65 52.3
BolC6t37169H Brassica oleracea HOM05D003702 ORTHO05D019976 4.6e-10 68.9 80 42.5
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 6.1e-10 68.6 32 87.5
Aqoxy7G02189 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.0e-09 67.8 31 90.3
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 1.9e-08 63.5 31 83.9
BcaC02g07984 Brassica carinata HOM05D003702 ORTHO05D014526 2.4e-06 56.6 34 64.7


User provided reference genes

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