Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 1.3e-90 336.3 162 100.0
CSS0014268 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 1.7e-40 169.9 165 61.8
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 7.2e-28 127.9 105 63.8
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 4.8e-24 115.2 109 55.0
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.8e-23 113.2 110 53.6
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.0e-21 107.5 105 51.4
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 2.2e-21 106.3 105 51.4
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.1e-20 104.0 64 76.6
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 2.5e-20 102.8 64 71.9
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 9.4e-20 100.9 102 48.0
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 9.4e-20 100.9 102 48.0
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 1.6e-19 100.1 105 48.6
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 2.7e-19 99.4 105 46.7
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 6.1e-19 98.2 105 50.5
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 1.8e-18 96.7 105 46.7
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 2.3e-18 96.3 71 64.8
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 3.0e-18 95.9 89 58.4
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 8.8e-18 94.4 104 46.2
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 2.6e-17 92.8 66 65.2
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 3.4e-17 92.4 101 45.5
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 3.4e-17 92.4 120 41.7
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 4.4e-17 92.0 105 44.8
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.4e-17 92.0 66 59.1
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 5.7e-17 91.7 105 47.6
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 7.5e-17 91.3 105 45.7
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.5e-17 91.3 69 56.5
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 7.5e-17 91.3 105 43.8
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 9.8e-17 90.9 66 59.1
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 9.8e-17 90.9 102 48.0
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 9.8e-17 90.9 105 43.8
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.3e-16 90.5 101 47.5
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.3e-16 90.5 112 43.8
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 2.2e-16 89.7 112 42.0
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.2e-16 89.7 69 55.1
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 2.8e-16 89.4 74 59.5
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 2.8e-16 89.4 102 48.0
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 3.7e-16 89.0 65 61.5
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 4.8e-16 88.6 64 65.6
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 6.3e-16 88.2 105 43.8
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 8.3e-16 87.8 101 48.5
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 8.3e-16 87.8 105 44.8
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 8.3e-16 87.8 105 43.8
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.1e-15 87.4 101 43.6
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 1.1e-15 87.4 101 43.6
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.1e-15 87.4 101 48.5
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 1.1e-15 87.4 64 60.9
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 1.8e-15 86.7 103 47.6
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.8e-15 86.7 101 45.5
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 1.8e-15 86.7 104 42.3
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 1.8e-15 86.7 66 62.1
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.4e-15 86.3 75 56.0
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 3.1e-15 85.9 63 63.5
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 3.1e-15 85.9 105 43.8
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 4.1e-15 85.5 62 66.1
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 4.1e-15 85.5 62 66.1
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 4.1e-15 85.5 102 45.1
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 7.0e-15 84.7 75 56.0
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 7.0e-15 84.7 75 56.0
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 7.0e-15 84.7 74 52.7
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 9.1e-15 84.3 64 64.1
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 9.1e-15 84.3 66 63.6
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 9.1e-15 84.3 64 59.4
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 1.2e-14 84.0 64 57.8
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 1.6e-14 83.6 105 43.8
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 2.0e-14 83.2 104 40.4
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 2.7e-14 82.8 105 43.8
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 4.5e-14 82.0 101 43.6
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 5.9e-14 81.6 103 43.7
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 1.0e-13 80.9 63 60.3
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 1.0e-13 80.9 63 55.6
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.0e-13 80.9 102 42.2
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.0e-13 80.9 102 42.2
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.3e-13 80.5 75 57.3
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.3e-13 80.5 106 42.5
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.7e-13 80.1 64 59.4
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 2.2e-13 79.7 66 57.6
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 2.2e-13 79.7 102 42.2
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 2.9e-13 79.3 64 57.8
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 3.8e-13 79.0 64 60.9
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 5.0e-13 78.6 64 56.2
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 5.0e-13 78.6 106 36.8
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 1.1e-12 77.4 78 46.2
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 1.9e-12 76.6 74 47.3
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 2.5e-12 76.3 64 54.7
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 2.5e-12 76.3 55 63.6
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 3.2e-12 75.9 64 53.1
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 3.2e-12 75.9 64 53.1
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 4.2e-12 75.5 64 53.1
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 5.5e-12 75.1 61 57.4
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 5.5e-12 75.1 64 53.1
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 5.5e-12 75.1 64 54.7
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 9.5e-12 74.3 64 57.8
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 3.6e-11 72.4 63 54.0
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 5.2e-10 68.6 64 54.7
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 8.8e-10 67.8 106 35.8
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 3.4e-09 65.9 49 65.3
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 4.4e-09 65.5 95 41.1
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 1.6e-06 57.0 36 72.2
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 7.7e-06 54.7 65 41.5


User provided reference genes

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