Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.3e-27 125.6 58 100.0
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.0e-24 113.6 71 78.9
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.0e-24 113.6 71 78.9
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.9e-23 111.7 71 78.9
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.3e-23 109.8 71 76.1
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.1e-22 108.2 71 78.9
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.8e-12 72.8 53 66.0
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.8e-12 72.8 53 66.0
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 4.1e-10 67.4 52 65.4
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.6e-09 65.5 53 58.5
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.6e-09 65.5 61 57.4
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.1e-09 65.1 53 60.4
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 4.6e-09 63.9 53 56.6
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 4.6e-09 63.9 53 60.4
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 7.8e-09 63.2 53 60.4
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 7.8e-09 63.2 53 58.5
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 7.8e-09 63.2 53 58.5
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.3e-08 62.4 53 56.6
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.0e-08 61.2 53 56.6
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.0e-08 61.2 53 56.6
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 3.9e-08 60.8 53 56.6
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 6.6e-08 60.1 51 60.8
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 8.6e-08 59.7 53 56.6
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 8.6e-08 59.7 51 60.8
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 8.6e-08 59.7 61 52.5
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 8.6e-08 59.7 53 56.6
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 8.6e-08 59.7 51 58.8
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 8.6e-08 59.7 51 58.8
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.1e-07 59.3 53 52.8
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.1e-07 59.3 53 56.6
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 1.5e-07 58.9 53 56.6
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.5e-07 58.9 53 56.6
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.5e-07 58.9 58 51.7
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.5e-07 58.2 53 56.6
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.5e-07 58.2 53 54.7
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 2.5e-07 58.2 61 52.5
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 3.3e-07 57.8 53 54.7
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 4.3e-07 57.4 53 54.7
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.3e-07 57.4 53 54.7
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 4.3e-07 57.4 59 50.8
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 4.3e-07 57.4 53 54.7
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 4.3e-07 57.4 53 54.7
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.3e-07 57.4 53 54.7
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 4.3e-07 57.4 53 54.7
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 5.6e-07 57.0 53 54.7
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 5.6e-07 57.0 53 58.5
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 5.6e-07 57.0 53 58.5
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 5.6e-07 57.0 53 58.5
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 7.3e-07 56.6 57 52.6
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 7.3e-07 56.6 59 50.8
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 7.3e-07 56.6 59 50.8
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 7.3e-07 56.6 53 58.5
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 9.5e-07 56.2 59 49.2
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 1.2e-06 55.8 53 50.9
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.2e-06 55.8 61 49.2
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.2e-06 55.8 53 52.8
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.2e-06 55.8 52 50.0
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.6e-06 55.5 53 56.6
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.6e-06 55.5 53 56.6
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 2.1e-06 55.1 53 54.7
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 2.8e-06 54.7 53 54.7
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.6e-06 54.3 59 45.8
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.6e-06 54.3 51 54.9
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.6e-06 54.3 51 54.9
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.7e-06 53.9 59 45.8
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 6.2e-06 53.5 53 50.9
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 8.1e-06 53.1 53 52.8
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 8.1e-06 53.1 59 45.8


User provided reference genes

Program Settings