Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1678.3 805 100.0
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1390.2 807 83.0
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1381.7 806 81.9
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1376.3 843 79.5
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1331.6 823 77.4
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1319.3 758 84.0
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1300.0 807 77.4
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1272.3 807 74.5
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1258.0 806 74.4
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1252.7 807 74.0
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1249.6 807 73.7
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1248.8 805 74.3
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1239.9 809 73.1
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1239.9 806 72.2
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1238.8 805 72.7
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1238.4 807 73.1
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1233.0 804 73.8
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1232.6 855 69.2
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1231.9 806 71.5
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1229.9 806 72.2
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1228.4 806 72.0
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1227.2 820 72.4
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1223.4 807 72.0
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1223.0 803 72.2
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1223.0 805 71.9
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1220.3 806 72.1
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1219.9 802 72.4
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1211.4 803 71.7
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1208.7 806 71.5
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1205.3 836 68.4
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1203.3 806 71.2
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1203.0 807 70.1
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1202.2 841 69.4
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1200.3 804 69.8
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1198.0 806 71.1
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1196.0 806 71.8
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1191.0 807 70.5
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1190.3 806 70.8
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1190.3 806 71.0
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1186.0 807 70.8
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1182.9 888 66.1
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1181.4 817 70.3
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1181.4 807 69.9
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1177.5 806 70.3
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1174.5 804 68.5
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1172.1 807 72.0
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1171.0 807 69.3
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1169.1 806 70.0
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1159.8 807 69.3
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1153.3 820 67.3
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1152.1 807 68.0
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1151.7 836 67.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1142.9 773 70.9
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1137.9 807 67.9
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1137.9 812 66.9
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1135.6 808 67.1
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1124.4 805 66.3
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1124.0 850 63.9
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1117.1 805 67.0
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1114.8 804 66.0
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1108.6 807 66.0
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1107.4 808 65.5
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1103.6 805 65.3
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1098.6 810 65.3
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1095.9 805 65.0
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1095.1 803 64.5
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1093.2 805 66.0
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1089.7 809 64.9
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1089.3 808 65.5
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1083.9 811 65.7
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1083.9 811 65.7
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1078.9 808 65.0
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1075.5 810 63.5
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 5.5e-312 1074.3 810 63.6
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 2.4e-310 1068.5 851 62.2
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 4.6e-309 1064.3 809 64.4
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 7.4e-307 1057.0 792 64.3
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 2.8e-306 1055.0 859 61.1
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 8.4e-303 1043.5 803 62.9
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 2.7e-301 1038.5 807 62.8
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 3.9e-300 1034.6 806 63.4
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 6.5e-295 1017.3 806 59.9
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 1.9e-294 1015.8 806 60.5
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.0e-292 1010.0 713 69.8
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 2.1e-290 1002.3 808 61.1
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 1.5e-283 979.5 719 66.9
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 7.4e-275 950.7 733 63.2
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 2.0e-272 942.6 598 75.6
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 4.5e-264 914.8 614 72.3
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 6.1e-261 904.4 615 70.9
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 7.2e-246 854.4 809 52.4
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 5.2e-228 795.0 611 63.8
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 1.1e-225 787.3 617 60.6
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 1.5e-198 697.2 461 72.9
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 9.6e-198 694.5 829 44.6
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 4.8e-197 692.2 830 45.2
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 3.5e-184 649.4 829 41.9
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 2.7e-176 623.2 531 58.0
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.6e-176 622.5 458 67.2
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.2e-168 597.8 399 77.7
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.8e-149 533.5 461 56.8
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 3.5e-139 500.0 351 68.9
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 2.0e-134 484.2 583 43.1
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 1.0e-130 471.9 446 53.1
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 5.9e-123 446.0 314 66.6
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 6.4e-117 426.0 464 47.2
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 4.6e-107 393.3 339 60.8
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 7.8e-107 392.5 307 70.0
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 7.8e-83 312.8 238 65.1
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 1.5e-81 308.5 193 68.4
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.0e-79 300.4 282 52.8
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 2.1e-72 278.1 490 36.9
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 8.4e-69 266.2 155 73.5
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 1.8e-63 248.4 134 81.3
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.2e-59 235.7 123 76.4
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 1.4e-44 185.7 134 56.7
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 2.7e-43 181.4 193 43.5
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.7e-43 181.4 189 50.3
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 1.0e-42 179.5 848 24.9
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.3e-40 172.6 93 77.4
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 4.1e-31 141.0 92 66.3
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 3.7e-24 117.9 54 88.9
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.3e-21 109.4 196 34.7
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 5.4e-15 87.4 77 48.1
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 1.7e-08 65.9 156 32.7
PSO170G4419 Papaver somniferum HOM05D003949 ORTHO05D004504 7.0e-07 60.5 173 25.4
Aqoxy117s002 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 9.2e-07 60.1 184 27.2
Aqoxy3G01750 Aquilegia oxysepala HOM05D003949 ORTHO05D004504 9.2e-07 60.1 184 27.2
Os10g0434999 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.7e-06 58.5 137 27.0
Os10g0435900 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.7e-06 58.5 137 27.0
Solyc12g056130.2 Solanum lycopersicum HOM05D001597 ORTHO05D001512 3.5e-06 58.2 172 31.4
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 3.5e-06 58.2 169 32.5
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 5.9e-06 57.4 156 32.7


User provided reference genes

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