Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-156 556.6 275 100.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.8e-132 476.1 260 94.2
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.4e-126 454.1 260 91.2
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.8e-122 441.8 260 85.8
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.8e-122 441.8 262 85.1
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.0e-122 441.4 260 85.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.5e-121 439.9 265 85.3
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.5e-121 439.1 261 85.1
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 9.4e-121 437.2 260 84.2
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-120 436.8 277 83.8
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.7e-120 434.9 261 84.7
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.3e-119 432.6 257 84.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 3.4e-118 428.7 261 82.4
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.8e-117 425.6 263 81.4
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.1e-116 422.2 262 80.2
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 3.1e-116 422.2 258 80.6
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 3.1e-116 422.2 258 80.6
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 7.0e-116 421.0 263 79.5
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 9.1e-116 420.6 263 81.0
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.2e-115 420.2 261 81.6
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 3.5e-115 418.7 261 80.1
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 4.5e-115 418.3 263 79.5
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 5.9e-115 417.9 260 81.5
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 5.9e-115 417.9 265 78.1
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 5.9e-115 417.9 261 81.6
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.7e-115 417.5 263 79.1
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 8.5e-114 414.1 262 78.6
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.5e-113 413.3 257 79.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.5e-113 413.3 264 78.0
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.6e-112 408.7 271 75.3
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 8.0e-112 407.5 261 77.8
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 8.0e-112 407.5 261 77.8
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 8.8e-111 404.1 261 77.8
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.2e-110 403.7 261 78.2
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.5e-110 403.3 258 77.5
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.8e-110 400.6 258 77.5
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.3e-109 400.2 256 78.1
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.7e-109 399.8 260 78.1
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.8e-109 399.1 259 77.6
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.8e-109 399.1 269 74.0
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.7e-109 398.7 259 77.2
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.9e-109 398.3 258 76.7
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 8.3e-109 397.5 261 75.1
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 8.3e-109 397.5 260 76.5
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.1e-108 397.1 262 78.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.4e-108 396.7 265 77.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.4e-108 396.7 255 78.8
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 2.4e-108 396.0 261 75.9
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.1e-108 395.6 263 77.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 4.1e-108 395.2 262 77.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.1e-108 394.0 259 77.6
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.6e-107 393.3 259 75.7
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.6e-107 393.3 262 77.1
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.7e-107 392.5 257 75.9
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.7e-107 392.5 257 75.9
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.5e-107 392.1 260 76.9
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.5e-107 392.1 255 77.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 5.9e-107 391.3 257 77.0
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.3e-106 389.4 260 75.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.3e-106 389.4 276 72.5
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.9e-106 389.0 257 78.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 3.8e-106 388.7 261 74.3
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 5.0e-106 388.3 258 75.6
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 6.6e-106 387.9 254 78.0
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 8.6e-106 387.5 258 74.4
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 8.6e-106 387.5 258 75.6
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.9e-105 386.3 264 74.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 2.5e-105 386.0 259 75.3
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 5.5e-105 384.8 259 74.5
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.5e-105 384.8 271 77.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 5.5e-105 384.8 258 76.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 7.2e-105 384.4 277 70.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 7.2e-105 384.4 258 75.2
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 9.5e-105 384.0 261 74.7
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-104 383.6 282 74.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.6e-104 383.3 262 73.3
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.6e-104 383.3 256 76.2
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.1e-104 382.9 257 77.0
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.8e-104 382.5 273 71.4
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 3.6e-104 382.1 258 72.9
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 2.3e-103 379.4 259 73.7
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 3.0e-103 379.0 259 74.1
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 4.0e-103 378.6 258 72.9
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 4.0e-103 378.6 257 77.0
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 4.0e-103 378.6 266 71.8
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 4.0e-103 378.6 258 74.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 6.8e-103 377.9 261 73.6
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 8.9e-103 377.5 259 73.7
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.2e-102 377.1 260 73.8
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 2.6e-102 375.9 261 72.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 9.8e-102 374.0 258 72.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.3e-101 373.6 261 72.4
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.7e-101 373.2 258 71.7
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 4.1e-100 368.6 261 71.3
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 7.0e-100 367.9 240 79.2
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.2e-99 367.1 258 74.0
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.6e-99 365.2 240 78.8
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 4.6e-99 365.2 285 69.1
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.9e-99 364.8 268 68.7
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.9e-99 364.8 268 68.7
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.0e-98 364.0 236 79.2
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 3.9e-98 362.1 260 70.8
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.0e-98 361.7 260 68.8
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 5.0e-98 361.7 260 69.2
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.1e-97 360.5 263 70.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.9e-97 359.8 257 71.2
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 5.6e-97 358.2 262 69.5
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 9.5e-97 357.5 256 71.1
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.2e-96 357.1 260 70.0
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-96 356.7 265 69.4
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.6e-96 356.7 262 69.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.1e-96 356.3 257 70.4
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.1e-96 356.3 263 69.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 2.8e-96 355.9 265 69.1
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.6e-96 355.5 265 69.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.8e-95 353.2 257 70.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.8e-95 353.2 257 70.0
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 5.8e-94 348.2 255 69.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.9e-93 345.1 239 72.8
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 9.2e-92 340.9 263 65.4
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 4.6e-91 338.6 266 64.7
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.3e-90 336.3 249 68.3
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.3e-90 336.3 255 67.8
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 7.3e-89 331.3 238 70.2
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.6e-88 328.9 262 64.1
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.6e-88 328.9 223 74.9
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 3.6e-88 328.9 217 77.0
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.1e-87 325.9 230 74.3
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.6e-80 303.5 212 75.9
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.1e-75 286.6 254 58.3
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 3.5e-75 285.8 200 75.5
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 4.0e-71 272.3 309 49.2
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 5.2e-71 271.9 252 59.5
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.2e-62 244.2 236 57.6
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 5.1e-58 228.8 171 69.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 4.3e-57 225.7 183 62.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.2e-54 217.6 255 51.4
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.1e-49 201.1 185 58.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.7e-43 179.9 220 49.1
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.0e-43 178.7 119 74.8
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 4.5e-38 162.5 140 62.9
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.0e-26 124.8 118 60.2
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 5.7e-25 119.0 179 43.0
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 7.4e-25 118.6 82 73.2
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.6e-14 84.3 56 67.9
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-13 80.1 52 67.3
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-13 80.1 52 67.3
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 9.4e-12 75.1 61 60.7
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.4e-09 66.2 37 83.8


User provided reference genes

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