Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 9.6e-175 616.7 305 100.0
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.1e-174 615.5 305 99.7
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.6e-161 571.6 305 90.2
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 6.7e-160 567.4 305 91.5
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 4.2e-154 548.1 305 86.6
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 7.2e-154 547.4 305 86.2
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 7.2e-154 547.4 305 88.2
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.6e-153 544.7 305 88.2
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.3e-152 542.3 305 85.6
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 3.0e-152 542.0 305 84.3
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 3.9e-152 541.6 305 85.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.0e-151 539.3 305 84.6
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 3.3e-151 538.5 305 86.9
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.7e-151 537.7 305 85.2
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 7.4e-151 537.3 304 86.5
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 84.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.2e-150 535.8 307 84.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 86.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 84.6
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 6.3e-150 534.3 305 86.2
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 85.9
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 86.6
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.9
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 83.9
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 4.1e-149 531.6 305 83.0
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 83.3
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 85.9
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 85.6
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 83.3
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 85.9
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 84.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.2
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 83.0
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 2.0e-148 529.3 305 84.3
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 84.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 84.3
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 82.6
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 84.3
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 84.3
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 85.2
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 83.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 83.3
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 85.6
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.9
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.9
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.9e-147 525.4 326 81.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 84.3
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 85.9
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 82.6
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 83.0
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 5.0e-147 524.6 301 86.0
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 82.6
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.9
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 84.9
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 84.6
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.0
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.5e-146 522.3 305 83.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 5.5e-146 521.2 305 82.6
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 82.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 82.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.1e-145 519.2 300 84.7
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 82.3
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 2.1e-145 519.2 303 84.5
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 82.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 83.6
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 82.6
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 82.0
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 82.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 7.9e-145 517.3 305 80.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.6
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.6
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 81.6
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 82.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 83.0
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 82.3
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 82.3
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 81.0
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 3.3e-143 511.9 302 83.4
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 4.4e-143 511.5 305 80.3
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.7e-142 509.6 305 82.6
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.7e-142 509.6 302 81.5
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 4.8e-142 508.1 308 81.2
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 2.4e-141 505.8 301 83.1
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.0e-140 502.7 330 75.5
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 1.3e-139 500.0 372 68.5
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.7e-139 499.6 305 80.3
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 1.7e-139 499.6 307 81.8
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 3.2e-138 495.4 303 77.6
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.2e-138 495.0 304 79.9
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.2e-138 494.2 307 77.2
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 78.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 2.7e-137 492.3 305 78.4
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 4.7e-137 491.5 307 77.9
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.4e-136 490.0 307 76.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 6.7e-136 487.6 307 75.9
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 8.8e-136 487.3 306 76.8
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-135 486.9 306 76.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.2e-135 486.9 306 76.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.2e-135 486.9 306 76.5
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 78.4
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 5.7e-135 484.6 308 76.9
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 5.7e-135 484.6 303 77.6
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 4.8e-134 481.5 305 75.7
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 8.2e-134 480.7 388 65.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 7.7e-132 474.2 304 75.7
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 7.7e-132 474.2 304 75.7
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 3.8e-131 471.9 304 75.3
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.5e-130 469.2 304 75.0
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 4.2e-130 468.4 305 76.1
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.8e-120 436.4 261 84.7
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 3.7e-118 428.7 306 67.0
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.4e-117 426.8 300 69.7
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.8e-117 426.4 304 66.8
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 5.9e-116 421.4 305 70.8
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 9.5e-114 414.1 304 65.1
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 8.0e-113 411.0 303 66.3
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.8e-109 399.8 235 84.3
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 2.4e-109 399.4 225 90.2
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 3.4e-103 379.0 303 61.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.9e-98 363.2 225 78.2
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 6.2e-97 358.2 311 58.5
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.4e-95 352.1 228 78.9
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.1e-90 337.4 208 77.9
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.6e-73 280.4 160 83.8
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.5e-66 257.3 143 85.3
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 3.3e-66 256.1 149 79.9
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 3.1e-64 249.6 181 69.6
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.5e-58 229.9 155 73.5
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 4.8e-57 225.7 153 70.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 6.5e-54 215.3 299 46.5
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 5.9e-39 165.6 80 93.8
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.3e-38 164.5 80 91.2
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.2e-38 163.7 125 64.8
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.9e-38 163.3 79 92.4
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.9e-38 163.3 299 35.1
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 3.8e-38 162.9 80 88.8
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 8.5e-38 161.8 89 83.1
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.4e-37 161.0 205 48.3
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 3.2e-37 159.8 136 53.7
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 1.4e-35 154.5 308 35.4
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 6.5e-30 135.6 79 83.5
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 6.7e-27 125.6 76 76.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.2e-23 114.8 58 89.7
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.5e-21 107.1 60 83.3
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 4.2e-21 106.3 64 76.6
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 2.0e-18 97.4 307 29.3
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.4e-16 91.3 69 75.4
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.1e-13 81.6 241 29.5


User provided reference genes

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