Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043940 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 1.6e-35 152.5 92 100.0
CSS0047322 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 4.1e-28 127.9 86 73.3
Nn2g10677 Nelumbo nucifera HOM05D001639 ORTHO05D004140 4.1e-28 127.9 86 70.9
CiPaw.01G276100 Carya illinoinensis HOM05D001639 ORTHO05D004140 7.0e-28 127.1 86 76.7
Manes.07G102700 Manihot esculenta HOM05D001639 ORTHO05D004140 7.0e-28 127.1 86 72.1
Prupe.2G217800 Prunus persica HOM05D001639 ORTHO05D004140 7.0e-28 127.1 86 72.1
CiPaw.02G176300 Carya illinoinensis HOM05D001639 ORTHO05D004140 9.1e-28 126.7 86 72.1
Duzib128G0828 Durio zibethinus HOM05D001639 ORTHO05D004140 9.1e-28 126.7 86 72.1
MD01G1130600 Malus domestica HOM05D001639 ORTHO05D004140 9.1e-28 126.7 86 72.1
Nn2g13007 Nelumbo nucifera HOM05D001639 ORTHO05D004140 9.1e-28 126.7 86 72.1
Manes.10G043100 Manihot esculenta HOM05D001639 ORTHO05D004140 1.2e-27 126.3 86 70.9
QL08p056763 Quercus lobata HOM05D001639 ORTHO05D004140 1.2e-27 126.3 86 72.1
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 1.2e-27 126.3 86 73.3
RcHm_v2.0_Chr1g0364061 Rosa chinensis HOM05D001639 ORTHO05D004140 1.2e-27 126.3 86 70.9
Thecc.10G068700 Theobroma cacao HOM05D001639 ORTHO05D004140 1.2e-27 126.3 86 70.9
Actinidia26626 Actinidia chinensis HOM05D001639 ORTHO05D004140 1.6e-27 125.9 86 79.1
Cfa001598 Carpinus fangiana HOM05D001639 ORTHO05D004140 2.7e-27 125.2 86 70.9
FvH4_7g20100 Fragaria vesca HOM05D001639 ORTHO05D004140 2.7e-27 125.2 86 69.8
Hma1.2p1_0453F.1_g156050 Hydrangea macrophylla HOM05D001639 ORTHO05D004140 2.7e-27 125.2 86 69.8
Atru.chr12.647 Acer truncatum HOM05D001639 ORTHO05D004140 3.5e-27 124.8 86 70.9
Atru.chr12.674 Acer truncatum HOM05D001639 ORTHO05D004140 3.5e-27 124.8 86 70.9
MD07G1178700 Malus domestica HOM05D001639 ORTHO05D004140 3.5e-27 124.8 86 69.8
vmacro04888 Vaccinium macrocarpon HOM05D001639 ORTHO05D004140 3.5e-27 124.8 86 70.9
Aqoxy3G00782 Aquilegia oxysepala HOM05D001639 ORTHO05D004140 4.5e-27 124.4 86 69.8
BcaB01g03879 Brassica carinata HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
BcaC01g05705 Brassica carinata HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
A03p19750 Brassica napus HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
C03p23000 Brassica napus HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
BolC3t14701H Brassica oleracea HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
BraA03t11227Z Brassica rapa HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
CARHR130060 Cardamine hirsuta HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
Eucgr.G02805 Eucalyptus grandis HOM05D001639 ORTHO05D004140 5.9e-27 124.0 86 69.8
Cc09_g02780 Coffea canephora HOM05D001639 ORTHO05D004140 7.7e-27 123.6 86 69.8
Dinv11803 Davidia involucrata HOM05D001639 ORTHO05D004140 7.7e-27 123.6 86 69.8
Sp4g18070 Schrenkiella parvula HOM05D001639 ORTHO05D004140 7.7e-27 123.6 85 70.6
TWI38G1401 Tripterygium wilfordii HOM05D001639 ORTHO05D004140 7.7e-27 123.6 86 69.8
unitig_37.g12289 Utricularia gibba HOM05D001639 ORTHO05D004140 7.7e-27 123.6 86 70.9
ATR1159G089 Amborella trichopoda HOM05D001639 ORTHO05D004140 1.0e-26 123.2 86 67.4
MSTRG.8167 Avicennia marina HOM05D001639 ORTHO05D004140 1.0e-26 123.2 86 70.9
PSO339G2101 Papaver somniferum HOM05D001639 ORTHO05D004140 1.0e-26 123.2 86 68.6
PSO384G0277 Papaver somniferum HOM05D001639 ORTHO05D004140 1.0e-26 123.2 86 68.6
Potri.008G043700 Populus trichocarpa HOM05D001639 ORTHO05D004140 1.0e-26 123.2 86 69.8
Aa31sc26G20 Aethionema arabicum HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
AL4G31920 Arabidopsis lyrata HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
AT2G35800 Arabidopsis thaliana HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
BcaB06g28874 Brassica carinata HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
BcaC02g07667 Brassica carinata HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
A04p27270 Brassica napus HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
C04p64790 Brassica napus HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
BolC4t27956H Brassica oleracea HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
BraA04t18225Z Brassica rapa HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
Carub.0004s1757 Capsella rubella HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
Thhalv10016258m.g Eutrema salsugineum HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 68.6
SalBow1G1021 Salvia bowleyana HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 67.4
SalBow1G3851 Salvia bowleyana HOM05D001639 ORTHO05D004140 1.3e-26 122.9 86 67.4
Ciclev10030708m.g Citrus clementina HOM05D001639 ORTHO05D004140 1.7e-26 122.5 86 69.8
Sabra08G0030200 Salix brachista HOM05D001639 ORTHO05D004140 1.7e-26 122.5 86 69.8
Gohir.A01G133400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 2.2e-26 122.1 86 69.8
Gohir.D01G117800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 2.2e-26 122.1 86 69.8
Gorai.002G143300 Gossypium raimondii HOM05D001639 ORTHO05D004140 2.2e-26 122.1 86 69.8
Peaxi162Scf00373g00710 Petunia axillaris HOM05D001639 ORTHO05D004140 2.2e-26 122.1 86 68.6
PGR142G2027 Punica granatum HOM05D001639 ORTHO05D004140 2.2e-26 122.1 86 65.1
Dinv31349 Davidia involucrata HOM05D001639 ORTHO05D004140 2.9e-26 121.7 86 68.6
Nitab4.5_0000061g0120 Nicotiana tabacum HOM05D001639 ORTHO05D004140 2.9e-26 121.7 86 67.4
Nitab4.5_0003116g0030 Nicotiana tabacum HOM05D001639 ORTHO05D004140 2.9e-26 121.7 86 67.4
Solyc04g050040.3 Solanum lycopersicum HOM05D001639 ORTHO05D004140 2.9e-26 121.7 86 68.6
Sopen04g020690 Solanum pennellii HOM05D001639 ORTHO05D004140 2.9e-26 121.7 86 68.6
CAN.G925.4 Capsicum annuum HOM05D001639 ORTHO05D004140 3.8e-26 121.3 86 67.4
CDE09G1351 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 3.8e-26 121.3 86 68.6
Duzib106G0065 Durio zibethinus HOM05D001639 ORTHO05D004140 3.8e-26 121.3 86 68.6
Hma1.2p1_0926F.1_g237560 Hydrangea macrophylla HOM05D001639 ORTHO05D004140 3.8e-26 121.3 88 68.2
Lj5g0017893 Lotus japonicus HOM05D001639 ORTHO05D004140 5.0e-26 120.9 86 67.4
Potri.010G217900 Populus trichocarpa HOM05D001639 ORTHO05D004140 5.0e-26 120.9 86 67.4
VMungo0720G0568 Vigna mungo HOM05D001639 ORTHO05D004140 5.0e-26 120.9 86 67.4
arahy.Tifrunner.gnm1.ann1.66TP8S Arachis hypogaea HOM05D001639 ORTHO05D004140 6.5e-26 120.6 86 66.3
arahy.Tifrunner.gnm1.ann1.ME3VYR Arachis hypogaea HOM05D001639 ORTHO05D004140 6.5e-26 120.6 86 66.3
Lalb_Chr19g0129511 Lupinus albus HOM05D001639 ORTHO05D004140 6.5e-26 120.6 86 68.6
Migut.F02030 Erythranthe guttata HOM05D001639 ORTHO05D004140 8.5e-26 120.2 86 68.6
Sabra10G0168600 Salix brachista HOM05D001639 ORTHO05D004140 8.5e-26 120.2 86 66.3
MELO3C012444.2 Cucumis melo HOM05D001639 ORTHO05D004140 1.1e-25 119.8 86 67.4
CsaV3_5G036460 Cucumis sativus L. HOM05D001639 ORTHO05D004140 1.1e-25 119.8 86 67.4
Pp3c7_16780 Physcomitrium patens HOM05D001639 ORTHO05D004140 1.5e-25 119.4 85 64.7
GSVIVG01016323001 Vitis vinifera HOM05D001639 ORTHO05D004140 1.5e-25 119.4 86 66.3
Cpa.g.sc60.50 Carica papaya HOM05D001639 ORTHO05D004140 3.2e-25 118.2 87 67.8
Zm00001eb163150 Zea mays HOM05D001639 ORTHO05D004140 3.2e-25 118.2 86 65.1
Ah.10g033000 Amaranthus hybridus HOM05D001639 ORTHO05D004140 4.2e-25 117.9 86 66.3
FAN01G0541 Fragaria x ananassa HOM05D001639 ORTHO05D004140 4.2e-25 117.9 94 63.8
Glyma.10G213200 Glycine max HOM05D001639 ORTHO05D004140 4.2e-25 117.9 86 66.3
Glyma.20G177800 Glycine max HOM05D001639 ORTHO05D004140 4.2e-25 117.9 86 66.3
HanXRQChr14g0440781 Helianthus annuus HOM05D001639 ORTHO05D004140 4.2e-25 117.9 86 61.6
CDE08G1518 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 5.5e-25 117.5 86 65.1
Zm00001eb094320 Zea mays HOM05D001639 ORTHO05D004140 5.5e-25 117.5 86 64.0
Hund22486 Selenicereus undatus HOM05D001639 ORTHO05D004140 9.4e-25 116.7 86 72.1
Lsat_1_v5_gn_2_114120 Lactuca sativa HOM05D001639 ORTHO05D004140 1.2e-24 116.3 86 61.6
ECA238G1467 Erigeron canadensis HOM05D001639 ORTHO05D004140 1.6e-24 115.9 86 61.6
HanXRQChr07g0200411 Helianthus annuus HOM05D001639 ORTHO05D004140 1.6e-24 115.9 86 59.3
Ca_10588_v3 Cicer arietinum L. HOM05D001639 ORTHO05D004140 2.1e-24 115.5 86 64.0
Psat6g184800 Pisum sativum HOM05D001639 ORTHO05D004140 2.1e-24 115.5 86 64.0
TPR.G1831 Trifolium pratense HOM05D001639 ORTHO05D004140 2.1e-24 115.5 86 64.0
Lalb_Chr06g0162161 Lupinus albus HOM05D001639 ORTHO05D004140 2.7e-24 115.2 86 61.6
FAN10G2085 Fragaria x ananassa HOM05D001639 ORTHO05D004140 3.6e-24 114.8 94 61.7
Pp3c11_8770 Physcomitrium patens HOM05D001639 ORTHO05D004140 4.7e-24 114.4 85 62.4
Medtr1g095780 Medicago truncatula HOM05D001639 ORTHO05D004140 6.1e-24 114.0 86 62.8
Sed0012976 Sechium edule HOM05D001639 ORTHO05D004140 6.1e-24 114.0 86 64.0
Sed0023440 Sechium edule HOM05D001639 ORTHO05D004140 6.1e-24 114.0 86 64.0
Gohir.D06G174400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.0e-23 113.2 87 67.8
Lj2g0005885 Lotus japonicus HOM05D001639 ORTHO05D004140 1.4e-23 112.8 86 64.0
Lalb_Chr02g0141921 Lupinus albus HOM05D001639 ORTHO05D004140 1.4e-23 112.8 86 61.6
AagrBONN_evm.TU.Sc2ySwM_228.2641 Anthoceros agrestis HOM05D001639 ORTHO05D004140 1.8e-23 112.5 86 62.8
Os11g0103700 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 1.8e-23 112.5 86 61.6
Gohir.A06G178700 Gossypium hirsutum HOM05D001639 ORTHO05D004140 2.3e-23 112.1 87 66.7
Sc20g0002120 Simmondsia chinensis HOM05D001639 ORTHO05D004140 2.3e-23 112.1 86 60.5
Haze_16931 Corylus avellana HOM05D001639 ORTHO05D004140 3.0e-23 111.7 86 67.4
Gorai.010G204000 Gossypium raimondii HOM05D001639 ORTHO05D004140 3.0e-23 111.7 87 66.7
TAR633G2433 Trochodendron aralioides HOM05D001639 ORTHO05D004140 4.0e-23 111.3 86 66.3
Os12g0103000 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 5.2e-23 110.9 86 60.5
FAN06G3703 Fragaria x ananassa HOM05D001639 ORTHO05D004140 8.8e-23 110.2 86 65.1
Phvul.007G092200 Phaseolus vulgaris HOM05D001639 ORTHO05D004140 1.2e-22 109.8 86 62.8
Gohir.A06G178800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 2.6e-22 108.6 87 63.2
EL10Ac2g03564 Beta vulgaris HOM05D001639 ORTHO05D004140 5.7e-22 107.5 90 60.0
Gohir.D06G174300 Gossypium hirsutum HOM05D001639 ORTHO05D004140 5.7e-22 107.5 87 63.2
Gorai.010G203900 Gossypium raimondii HOM05D001639 ORTHO05D004140 9.8e-22 106.7 85 63.5
TAR369G0055 Trochodendron aralioides HOM05D001639 ORTHO05D004140 2.8e-21 105.1 86 61.6
ClCG05G020850 Citrullus lanatus HOM05D001639 ORTHO05D004140 1.1e-20 103.2 86 61.6
HPP92_019720 Vanilla planifolia HOM05D001639 ORTHO05D004140 1.8e-20 102.4 86 55.8
HPP92_019724 Vanilla planifolia HOM05D001639 ORTHO05D004140 1.8e-20 102.4 86 55.8
Actinidia13005 Actinidia chinensis HOM05D001639 ORTHO05D004140 3.1e-20 101.7 96 56.2
AUR62020778 Chenopodium quinoa HOM05D001639 ORTHO05D004140 4.5e-19 97.8 86 58.1
AUR62027922 Chenopodium quinoa HOM05D001639 ORTHO05D004140 1.3e-18 96.3 86 57.0
DCAR_002967 Daucus carota HOM05D001639 ORTHO05D004140 1.7e-18 95.9 81 60.5
SGA_v2.0_scaffold329G48833 Striga asiatica HOM05D001639 ORTHO05D004140 1.1e-17 93.2 135 43.0
CBR_g34975 Chara braunii HOM05D001639 ORTHO05D004140 1.5e-17 92.8 85 50.6
unitig_736.g22511 Utricularia gibba HOM05D001639 ORTHO05D004140 1.5e-17 92.8 72 63.9
Lalb_Chr21g0305951 Lupinus albus HOM05D001639 ORTHO05D004140 2.5e-17 92.0 73 58.9
SMO351G0172 Selaginella moellendorffii HOM05D001639 ORTHO05D004140 4.2e-17 91.3 97 47.4
DCAR_006463 Daucus carota HOM05D001639 ORTHO05D004140 5.5e-17 90.9 86 54.7
Sp4g07080 Schrenkiella parvula HOM05D001639 ORTHO05D004140 3.0e-15 85.1 78 57.7
SalBow3G0579 Salvia bowleyana HOM05D001639 ORTHO05D004140 6.8e-15 84.0 73 58.9
SalBow3G3782 Salvia bowleyana HOM05D001639 ORTHO05D004140 6.8e-15 84.0 73 58.9
Thhalv10002008m.g Eutrema salsugineum HOM05D001639 ORTHO05D004140 8.8e-15 83.6 78 55.1
Aa31LG5G9460 Aethionema arabicum HOM05D001639 ORTHO05D004140 1.2e-14 83.2 78 56.4
Migut.F01802 Erythranthe guttata HOM05D001639 ORTHO05D004140 2.0e-14 82.4 71 57.7
AL4G19000 Arabidopsis lyrata HOM05D001639 ORTHO05D004140 3.4e-14 81.6 72 59.7
AT2G26360 Arabidopsis thaliana HOM05D001639 ORTHO05D004140 3.4e-14 81.6 72 59.7
arahy.Tifrunner.gnm1.ann1.5403MX Arachis hypogaea HOM05D001639 ORTHO05D004140 3.4e-14 81.6 87 54.0
A04p20350 Brassica napus HOM05D001639 ORTHO05D004140 4.4e-14 81.3 73 56.2
BraA04t17614Z Brassica rapa HOM05D001639 ORTHO05D004140 4.4e-14 81.3 73 56.2
Carub.0004s0628 Capsella rubella HOM05D001639 ORTHO05D004140 5.7e-14 80.9 78 55.1
BcaB06g28095 Brassica carinata HOM05D001639 ORTHO05D004140 1.3e-13 79.7 70 58.6
BcaC02g08292 Brassica carinata HOM05D001639 ORTHO05D004140 1.3e-13 79.7 70 58.6
BcaC02g08293 Brassica carinata HOM05D001639 ORTHO05D004140 1.3e-13 79.7 70 58.6
C04p56050 Brassica napus HOM05D001639 ORTHO05D004140 1.3e-13 79.7 70 58.6
BolC4t27138H Brassica oleracea HOM05D001639 ORTHO05D004140 1.3e-13 79.7 70 58.6
arahy.Tifrunner.gnm1.ann1.Q3J83G Arachis hypogaea HOM05D001639 ORTHO05D004140 2.2e-13 79.0 82 53.7
HPP92_006743 Vanilla planifolia HOM05D001639 ORTHO05D004140 1.4e-12 76.3 85 44.7
PSO384G1319 Papaver somniferum HOM05D001639 ORTHO05D004140 2.3e-10 68.9 39 76.9
Aqoxy1G03621 Aquilegia oxysepala HOM05D000025 ORTHO05D078008 2.5e-09 65.5 38 73.7
FAN03G2481 Fragaria x ananassa HOM05D001639 ORTHO05D004140 2.8e-08 62.0 50 60.0
COL.COLO4_23728 Corchorus olitorius HOM05D001639 ORTHO05D004140 1.0e-07 60.1 48 60.4
CDE02G2748 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 3.0e-07 58.5 54 51.9
Lj1A922T71 Lonicera japonica HOM05D001639 ORTHO05D004140 6.8e-07 57.4 48 58.3
MCO02G013 Micromonas commoda HOM05D001639 ORTHO05D004140 3.4e-06 55.1 91 33.0
SGA_v2.0_scaffold122G33240 Striga asiatica HOM05D001639 ORTHO05D004140 3.4e-06 55.1 71 42.3


User provided reference genes

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