Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.1e-58 229.9 205 86.8
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.1e-58 229.9 205 100.0
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.2e-33 145.6 204 68.1
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.4e-30 137.5 204 65.2
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 4.1e-30 136.0 204 58.3
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.3e-30 135.6 217 55.8
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 7.0e-30 135.2 201 64.7
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 2.0e-29 133.7 193 68.9
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 6.5e-28 128.6 204 59.8
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 8.5e-28 128.3 193 61.1
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 7.2e-27 125.2 204 56.9
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 8.0e-26 121.7 207 66.2
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 1.8e-25 120.6 201 56.7
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.5e-24 117.5 193 70.5
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.5e-24 117.5 189 62.4
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.0e-24 117.1 204 63.2
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.4e-24 115.9 205 72.2
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.4e-24 115.9 204 57.4
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 9.7e-24 114.8 204 58.3
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.3e-23 114.4 193 65.8
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.7e-23 114.0 117 65.8
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.7e-23 114.0 81 81.5
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 2.2e-23 113.6 192 75.0
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 3.7e-23 112.8 81 80.2
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.1e-22 111.3 127 61.4
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.4e-22 110.2 204 59.3
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.0e-21 107.1 129 61.2
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.5e-21 106.3 194 63.9
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 4.5e-21 105.9 194 59.3
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 4.5e-21 105.9 205 68.8
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 1.0e-20 104.8 81 77.8
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.0e-20 104.8 206 57.3
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.0e-20 104.8 201 57.2
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.3e-20 104.4 196 66.8
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.7e-20 104.0 197 44.7
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.7e-20 104.0 128 60.2
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 2.2e-20 103.6 194 62.9
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.9e-20 103.2 196 55.1
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 5.0e-20 102.4 114 57.0
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 8.5e-20 101.7 125 56.0
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 8.5e-20 101.7 190 56.8
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.5e-19 100.9 181 65.2
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.5e-19 100.1 191 56.0
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 5.5e-19 99.0 70 82.9
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.2e-18 97.8 188 58.0
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.6e-18 97.4 195 63.1
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.6e-18 97.4 118 59.3
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 2.7e-18 96.7 80 68.8
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 2.7e-18 96.7 193 59.6
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 4.7e-18 95.9 117 53.8
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.1e-18 95.5 207 64.3
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 8.0e-18 95.1 126 60.3
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.0e-18 95.1 129 59.7
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.0e-17 94.7 122 52.5
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.0e-17 94.7 193 56.0
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 1.8e-17 94.0 192 54.7
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.3e-17 93.6 196 54.1
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 2.3e-17 93.6 81 69.1
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 8.8e-17 91.7 115 56.5
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.2e-16 91.3 196 53.1
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 1.2e-16 91.3 204 60.8
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.2e-16 91.3 69 78.3
Actinidia06603 Actinidia chinensis HOM05D003347 ORTHO05D003821 2.0e-16 90.5 192 66.1
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 2.0e-16 90.5 123 61.0
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.6e-16 90.1 229 48.9
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 2.6e-16 90.1 117 52.1
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.4e-16 89.4 96 61.5
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.7e-16 89.0 81 69.1
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 9.8e-16 88.2 69 76.8
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 1.3e-15 87.8 129 51.9
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.3e-15 87.8 81 70.4
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 1.7e-15 87.4 190 71.1
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 4.8e-15 85.9 129 58.1
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 4.8e-15 85.9 81 67.9
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 6.3e-15 85.5 120 51.7
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.4e-14 84.3 194 61.3
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 1.8e-14 84.0 120 53.3
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 2.4e-14 83.6 180 55.6
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 3.1e-14 83.2 195 50.8
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 3.1e-14 83.2 69 71.0
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 3.1e-14 83.2 116 51.7
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.0e-14 82.0 121 47.9
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 7.0e-14 82.0 201 48.8
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 9.1e-14 81.6 194 48.5
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 9.1e-14 81.6 120 51.7
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 9.1e-14 81.6 119 58.8
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 9.1e-14 81.6 68 75.0
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.2e-13 81.3 195 49.2
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 1.6e-13 80.9 67 68.7
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.6e-13 80.9 74 66.2
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 2.0e-13 80.5 68 69.1
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.7e-13 80.1 191 50.3
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 3.5e-13 79.7 195 61.0
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 4.5e-13 79.3 119 54.6
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 4.5e-13 79.3 195 51.8
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.7e-13 78.6 120 50.8
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 7.7e-13 78.6 123 45.5
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.0e-12 78.2 81 65.4
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 1.0e-12 78.2 82 68.3
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.3e-12 77.8 124 43.5
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 2.3e-12 77.0 81 56.8
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 2.3e-12 77.0 81 56.8
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.3e-12 77.0 141 61.7
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 3.8e-12 76.3 232 47.4
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.8e-12 76.3 85 67.1
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 3.8e-12 76.3 59 74.6
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 5.0e-12 75.9 118 47.5
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 8.6e-12 75.1 120 49.2
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 8.6e-12 75.1 71 60.6
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 8.6e-12 75.1 113 54.0
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.1e-11 74.7 142 52.8
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 1.1e-11 74.7 103 61.2
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 1.5e-11 74.3 81 58.0
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.9e-11 73.9 72 61.1
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.9e-11 73.9 101 62.4
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 2.5e-11 73.6 81 59.3
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.5e-11 73.6 97 53.6
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.2e-11 73.2 118 44.1
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 4.2e-11 72.8 125 55.2
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 9.5e-11 71.6 176 52.8
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 1.2e-10 71.2 115 55.7
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.1e-10 70.5 72 58.3
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.1e-10 70.5 105 55.2
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 2.8e-10 70.1 115 52.2
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 3.6e-10 69.7 94 59.6
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 4.7e-10 69.3 80 53.8
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 4.7e-10 69.3 111 50.5
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 1.0e-09 68.2 130 52.3
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.0e-09 68.2 87 48.3
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 8.8e-09 65.1 81 53.1
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.2e-08 64.7 136 41.2
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.2e-08 64.7 81 50.6
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 1.5e-08 64.3 119 42.0
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 1.5e-08 64.3 221 46.6
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.0e-08 63.9 59 64.4
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 2.0e-08 63.9 172 51.2
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.6e-08 63.5 194 54.6
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 2.6e-08 63.5 115 46.1
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 4.4e-08 62.8 136 40.4
Dinv06006 Davidia involucrata HOM05D003347 ORTHO05D003821 4.4e-08 62.8 140 75.7
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 5.7e-08 62.4 69 60.9
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 5.7e-08 62.4 69 56.5
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 7.5e-08 62.0 127 46.5
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 7.5e-08 62.0 116 50.9
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 7.5e-08 62.0 104 55.8
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 7.5e-08 62.0 73 47.9
arahy.Tifrunner.gnm1.ann1.0YHR6E Arachis hypogaea HOM05D003347 ORTHO05D003821 1.3e-07 61.2 114 52.6
arahy.Tifrunner.gnm1.ann1.3X6E38 Arachis hypogaea HOM05D003347 ORTHO05D003821 1.3e-07 61.2 114 52.6
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.3e-07 61.2 49 69.4
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 1.7e-07 60.8 232 39.7
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 1.7e-07 60.8 89 50.6
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 3.7e-07 59.7 87 57.5
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.9e-07 59.3 120 50.0
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 4.9e-07 59.3 121 48.8
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 4.9e-07 59.3 47 68.1
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 6.3e-07 58.9 120 50.0
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.3e-07 58.9 120 50.0
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 6.3e-07 58.9 48 68.8
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 8.3e-07 58.5 38 84.2
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 8.3e-07 58.5 127 40.9
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.3e-07 58.5 130 43.1
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 1.8e-06 57.4 70 55.7
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.8e-06 57.4 45 66.7
Cc07_g19150 Coffea canephora HOM05D003347 ORTHO05D003821 4.1e-06 56.2 100 57.0
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.1e-06 56.2 113 49.6
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 5.4e-06 55.8 116 48.3
Ca_17010_v3 Cicer arietinum L. HOM05D003347 ORTHO05D003821 9.2e-06 55.1 81 51.9
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 9.2e-06 55.1 41 73.2
Lj4A831G76 Lonicera japonica HOM05D003347 ORTHO05D003821 9.2e-06 55.1 64 82.8


User provided reference genes

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