Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 0.0e+00 1107.0 565 100.0
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 6.8e-267 923.7 566 82.5
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 1.3e-262 909.4 567 82.2
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.8e-259 899.0 526 82.9
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 7.1e-256 887.1 564 78.2
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 1.2e-255 886.3 566 78.1
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 1.1e-253 879.8 571 79.3
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 9.6e-253 876.7 564 78.7
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 1.2e-252 876.3 567 79.0
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 1.2e-250 869.8 565 79.6
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.1e-248 863.2 551 79.9
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 7.8e-247 857.1 567 76.9
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 1.7e-246 855.9 567 77.6
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 3.0e-246 855.1 552 76.1
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 2.0e-242 842.4 557 78.3
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 2.0e-242 842.4 566 75.3
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 4.4e-242 841.3 575 76.0
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 7.6e-242 840.5 566 77.4
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 1.1e-240 836.6 561 75.0
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 1.9e-240 835.9 566 74.2
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 9.3e-240 833.6 569 74.0
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 9.3e-240 833.6 565 74.7
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 1.0e-238 830.1 558 72.2
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 1.7e-238 829.3 569 73.5
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 5.1e-238 827.8 577 73.0
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 2.5e-237 825.5 637 70.0
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 2.5e-237 825.5 637 70.0
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 3.3e-237 825.1 566 74.0
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 7.4e-237 823.9 568 72.5
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 1.3e-236 823.2 562 74.6
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 2.8e-236 822.0 567 74.3
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 3.6e-236 821.6 566 73.3
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 4.8e-236 821.2 557 73.8
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 4.8e-236 821.2 566 73.5
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 1.1e-235 820.1 567 73.5
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 1.1e-235 820.1 565 73.1
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 1.4e-235 819.7 522 78.4
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 2.4e-235 818.9 533 74.9
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 3.1e-235 818.5 557 73.6
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 1.5e-234 816.2 563 72.6
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 4.5e-234 814.7 553 75.6
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.8e-234 814.3 587 70.7
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 1.1e-232 810.1 568 72.5
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 3.2e-232 808.5 557 73.6
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 6.0e-231 804.3 553 71.1
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 7.9e-231 803.9 556 74.5
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 1.0e-230 803.5 535 73.8
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.0e-230 803.5 558 72.8
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 1.8e-230 802.7 531 73.4
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.8e-230 802.7 552 72.5
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 1.9e-229 799.3 565 71.9
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 4.3e-229 798.1 539 75.1
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 9.6e-229 797.0 552 71.6
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 2.8e-228 795.4 562 71.7
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 1.1e-227 793.5 555 69.9
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 3.1e-227 792.0 555 74.2
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 5.3e-227 791.2 570 70.5
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 3.8e-225 785.0 559 71.9
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 7.1e-224 780.8 562 69.0
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 7.9e-223 777.3 561 72.7
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 3.0e-222 775.4 563 67.3
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 4.3e-221 771.5 662 62.7
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 1.8e-219 766.1 497 76.5
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 7.6e-218 760.8 514 72.8
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 2.2e-217 759.2 503 78.1
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 6.5e-217 757.7 470 74.3
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 3.2e-216 755.4 431 80.0
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 2.7e-215 752.3 444 78.6
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 4.6e-215 751.5 555 67.2
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 1.3e-214 750.0 483 72.5
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.3e-214 750.0 590 68.3
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 6.3e-212 741.1 579 68.7
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 4.1e-211 738.4 569 67.7
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 5.3e-211 738.0 564 65.6
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 6.9e-211 737.6 465 76.1
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 1.0e-206 723.8 563 63.2
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 1.4e-206 723.4 503 71.4
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 5.1e-206 721.5 484 70.0
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 1.1e-205 720.3 448 72.5
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 5.9e-202 708.0 497 67.4
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 6.5e-201 704.5 487 67.8
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 3.9e-198 695.3 567 63.1
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 3.3e-197 692.2 467 70.0
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 3.3e-197 692.2 467 70.0
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 3.7e-196 688.7 451 71.8
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 6.3e-196 688.0 502 69.1
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 7.0e-195 684.5 451 71.4
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 3.5e-194 682.2 506 67.2
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 4.5e-194 681.8 432 72.9
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 3.8e-193 678.7 435 72.2
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 1.5e-192 676.8 569 60.1
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 4.2e-192 675.2 506 68.2
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 6.7e-190 667.9 564 62.1
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 5.9e-186 654.8 565 61.6
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 9.8e-181 637.5 439 65.1
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 2.0e-173 613.2 462 62.8
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 4.1e-171 605.5 479 56.6
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.0e-169 598.6 372 77.7
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.8e-166 590.1 466 59.7
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 1.3e-156 557.4 433 58.0
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 3.2e-155 552.7 564 54.4
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.4e-147 527.3 477 57.7
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.3e-108 397.9 266 76.3
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 8.0e-82 308.9 162 87.0
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 1.8e-62 244.6 300 47.3
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 3.6e-58 230.3 458 32.5
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 2.0e-53 214.5 141 63.8
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 4.9e-47 193.4 124 76.6
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 5.4e-46 189.9 105 78.1
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.1e-41 175.6 262 44.3
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.8e-40 169.9 113 69.9
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 2.9e-39 167.5 141 66.0
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 2.9e-31 141.0 178 49.4
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 1.1e-30 139.0 109 63.3
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 9.2e-30 136.0 109 62.4
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 3.5e-29 134.0 94 68.1
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 9.9e-24 115.9 59 89.8
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.1e-19 102.4 74 70.3
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 6.2e-18 96.7 196 36.2
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.2e-16 92.4 223 29.1
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 2.6e-16 91.3 335 26.0
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 9.9e-16 89.4 70 68.6
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.3e-15 89.0 331 25.1
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.7e-15 88.6 332 24.1
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 3.2e-14 84.3 334 23.1
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 4.2e-14 84.0 327 23.9
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.4e-14 83.6 335 24.8
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 7.1e-14 83.2 327 23.9
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.2e-13 82.4 329 23.4
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.2e-13 82.4 248 25.8
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 3.5e-13 80.9 260 26.5
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 3.9e-12 77.4 334 22.5
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 6.6e-12 76.6 313 25.2
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.5e-11 74.7 211 26.5
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 3.3e-11 74.3 332 23.5
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 3.3e-11 74.3 248 26.2
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 9.6e-11 72.8 335 22.7
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 1.3e-10 72.4 48 60.4
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 1.3e-10 72.4 267 25.8
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 3.6e-10 70.9 328 23.2
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 3.6e-10 70.9 339 23.9
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 4.8e-10 70.5 328 22.6
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 8.1e-10 69.7 328 22.6
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 2.6e-08 64.7 264 22.0
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.4e-08 64.3 348 22.7
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.9e-08 62.8 334 23.1
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 9.9e-08 62.8 333 23.1
AUR62026981 Chenopodium quinoa HOM05D000096 ORTHO05D000045 2.9e-07 61.2 40 67.5
GSVIVG01015458001 Vitis vinifera HOM05D000836 ORTHO05D000709 4.9e-07 60.5 222 23.0
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 1.1e-06 59.3 183 25.7
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 1.1e-06 59.3 183 25.7
Hma1.2p1_0003F.1_g003610 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 1.1e-06 59.3 39 64.1
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 1.4e-06 58.9 183 25.7
Os03g0286800 Oryza sativa ssp. japonica HOM05D002236 ORTHO05D002341 1.4e-06 58.9 358 20.7
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 2.4e-06 58.2 225 25.8
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 5.4e-06 57.0 131 28.2
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 7.1e-06 56.6 90 31.1
MCO15G626 Micromonas commoda HOM05D001978 ORTHO05D003036 7.1e-06 56.6 187 25.1
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 9.3e-06 56.2 90 31.1
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 9.3e-06 56.2 208 26.0


User provided reference genes

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