Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 4.8e-107 391.3 221 100.0
CSS0031426 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D000289 1.5e-52 210.3 192 59.4
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.6e-49 200.3 201 54.7
Rhsim13G0085900 Rhododendron simsii HOM05D004206 ORTHO05D003325 6.1e-38 161.8 182 52.7
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 4.1e-34 149.1 195 50.3
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.7e-19 100.5 149 42.3
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.2e-19 100.1 154 40.9
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.9e-15 87.0 214 32.7
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 1.8e-13 80.5 118 41.5
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 5.2e-13 79.0 91 47.3
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.0e-12 77.0 113 46.0
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 2.0e-12 77.0 122 37.7
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.6e-12 76.6 147 38.8
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 3.4e-12 76.3 177 34.5
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 4.4e-12 75.9 102 42.2
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 4.4e-12 75.9 102 42.2
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 7.6e-12 75.1 145 36.6
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 1.3e-11 74.3 102 41.2
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 2.2e-11 73.6 119 40.3
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 2.2e-11 73.6 107 40.2
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 2.2e-11 73.6 162 34.0
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 2.2e-11 73.6 54 64.8
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.9e-11 73.2 172 38.4
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 2.9e-11 73.2 91 44.0
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 4.9e-11 72.4 161 36.0
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 4.9e-11 72.4 54 63.0
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 4.9e-11 72.4 54 63.0
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 4.9e-11 72.4 153 35.9
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 6.4e-11 72.0 115 40.9
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 6.4e-11 72.0 143 38.5
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 6.4e-11 72.0 113 33.6
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 6.4e-11 72.0 138 37.7
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 8.4e-11 71.6 54 63.0
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 8.4e-11 71.6 66 53.0
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 1.1e-10 71.2 118 39.8
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.1e-10 71.2 159 33.3
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.4e-10 70.9 184 32.6
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.4e-10 70.9 47 70.2
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 1.4e-10 70.9 66 54.5
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.9e-10 70.5 102 40.2
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.4e-10 70.1 47 70.2
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.4e-10 70.1 47 70.2
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 2.4e-10 70.1 159 34.0
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 3.2e-10 69.7 77 46.8
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 4.1e-10 69.3 110 42.7
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 4.1e-10 69.3 167 31.1
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 5.4e-10 68.9 123 39.0
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 5.4e-10 68.9 160 38.1
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 5.4e-10 68.9 98 40.8
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 7.1e-10 68.6 54 66.7
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 9.2e-10 68.2 66 51.5
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.2e-09 67.8 80 46.2
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 1.6e-09 67.4 148 33.1
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 1.6e-09 67.4 120 37.5
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 2.1e-09 67.0 56 60.7
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 2.1e-09 67.0 98 40.8
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 2.7e-09 66.6 75 45.3
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 2.7e-09 66.6 97 39.2
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 2.7e-09 66.6 55 58.2
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.7e-09 66.6 56 60.7
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.7e-09 66.6 56 60.7
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 3.5e-09 66.2 157 35.0
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 4.6e-09 65.9 56 55.4
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 4.6e-09 65.9 54 53.7
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 6.0e-09 65.5 56 57.1
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 6.0e-09 65.5 124 35.5
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 7.8e-09 65.1 95 40.0
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 7.8e-09 65.1 172 31.4
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 1.0e-08 64.7 45 68.9
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.0e-08 64.7 151 35.1
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.3e-08 64.3 111 36.0
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 1.3e-08 64.3 111 35.1
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.7e-08 63.9 53 56.6
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.7e-08 63.9 56 55.4
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 1.7e-08 63.9 103 40.8
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.7e-08 63.9 54 55.6
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 1.7e-08 63.9 54 55.6
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 2.3e-08 63.5 45 64.4
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 3.0e-08 63.2 51 56.9
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 3.0e-08 63.2 50 58.0
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 3.0e-08 63.2 155 31.0
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 3.0e-08 63.2 154 31.8
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.0e-08 63.2 100 37.0
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.0e-08 63.2 98 37.8
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.0e-08 63.2 57 54.4
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.0e-08 63.2 89 43.8
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 3.0e-08 63.2 109 37.6
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 3.9e-08 62.8 94 42.6
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.9e-08 62.8 56 53.6
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.9e-08 62.8 46 63.0
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 3.9e-08 62.8 46 63.0
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 3.9e-08 62.8 47 66.0
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 3.9e-08 62.8 157 32.5
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.1e-08 62.4 189 31.7
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 5.1e-08 62.4 81 42.0
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 5.1e-08 62.4 106 43.4
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 5.1e-08 62.4 44 65.9
BcaC02g11856 Brassica carinata HOM05D008508 ORTHO05D003325 6.6e-08 62.0 47 59.6
C04p10560 Brassica napus HOM05D008508 ORTHO05D003325 6.6e-08 62.0 47 59.6
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 6.6e-08 62.0 47 59.6
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 6.6e-08 62.0 162 33.3
A05p08470 Brassica napus HOM05D008508 ORTHO05D003325 8.6e-08 61.6 73 47.9
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 8.6e-08 61.6 53 50.9
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 8.6e-08 61.6 204 31.4
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.1e-07 61.2 51 54.9
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.1e-07 61.2 94 43.6
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 1.1e-07 61.2 71 47.9
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 1.1e-07 61.2 51 60.8
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 1.5e-07 60.8 143 33.6
MBI14_g07165_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 1.5e-07 60.8 151 33.8
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 1.5e-07 60.8 43 67.4
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 1.5e-07 60.8 89 42.7
THA.LOC104806576 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 1.5e-07 60.8 67 52.2
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 1.9e-07 60.5 47 57.4
BraA04t18340Z Brassica rapa HOM05D008508 ORTHO05D003325 1.9e-07 60.5 108 36.1
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 1.9e-07 60.5 90 42.2
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.9e-07 60.5 61 49.2
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 1.9e-07 60.5 89 41.6
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 2.5e-07 60.1 49 61.2
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 2.5e-07 60.1 49 61.2
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 2.5e-07 60.1 49 61.2
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 2.5e-07 60.1 49 61.2
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 2.5e-07 60.1 49 61.2
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 2.5e-07 60.1 122 37.7
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 2.5e-07 60.1 72 43.1
Migut.M01027 Erythranthe guttata HOM05D004206 ORTHO05D003325 2.5e-07 60.1 55 52.7
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 2.5e-07 60.1 71 50.7
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 3.3e-07 59.7 53 56.6
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 3.3e-07 59.7 82 40.2
MBI14_g24307_MAGBIO Magnolia biondii HOM05D039687 ORTHO05D003325 3.3e-07 59.7 58 55.2
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 3.3e-07 59.7 93 39.8
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 3.3e-07 59.7 77 49.4
HPP92_000797 Vanilla planifolia HOM05D004206 ORTHO05D003325 3.3e-07 59.7 169 28.4
BcaB02g07768 Brassica carinata HOM05D008508 ORTHO05D003325 4.3e-07 59.3 52 57.7
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 5.6e-07 58.9 53 54.7
BcaC01g05613 Brassica carinata HOM05D008508 ORTHO05D003325 5.6e-07 58.9 53 49.1
C03p24300 Brassica napus HOM05D008508 ORTHO05D003325 5.6e-07 58.9 53 49.1
BolC3t14826H Brassica oleracea HOM05D008508 ORTHO05D003325 5.6e-07 58.9 53 49.1
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 5.6e-07 58.9 50 54.0
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 7.3e-07 58.5 46 56.5
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 7.3e-07 58.5 49 53.1
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 7.3e-07 58.5 49 53.1
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 7.3e-07 58.5 56 51.8
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 7.3e-07 58.5 68 47.1
Os05g0113500 Oryza sativa ssp. japonica HOM05D004206 ORTHO05D003325 7.3e-07 58.5 57 49.1
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 7.3e-07 58.5 55 52.7
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 7.3e-07 58.5 47 55.3
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 9.6e-07 58.2 58 50.0
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 9.6e-07 58.2 49 53.1
TAR636G2227 Trochodendron aralioides HOM05D039687 ORTHO05D003325 9.6e-07 58.2 147 31.3
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 1.2e-06 57.8 73 43.8
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 1.2e-06 57.8 54 53.7
A03p20680 Brassica napus HOM05D008508 ORTHO05D003325 1.6e-06 57.4 49 53.1
BraA03t11309Z Brassica rapa HOM05D008508 ORTHO05D003325 1.6e-06 57.4 49 53.1
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 1.6e-06 57.4 181 30.4
HanXRQChr14g0459281 Helianthus annuus HOM05D004206 ORTHO05D003325 1.6e-06 57.4 67 47.8
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 1.6e-06 57.4 62 51.6
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 2.1e-06 57.0 65 43.1
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.1e-06 57.0 41 65.9
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 2.8e-06 56.6 39 69.2
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 2.8e-06 56.6 73 38.4
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 2.8e-06 56.6 48 60.4
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 2.8e-06 56.6 55 52.7
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 2.8e-06 56.6 49 61.2
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 3.6e-06 56.2 42 61.9
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 3.6e-06 56.2 86 38.4
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 3.6e-06 56.2 48 58.3
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 4.7e-06 55.8 51 52.9
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 4.7e-06 55.8 54 48.1
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 4.7e-06 55.8 135 34.1
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 4.7e-06 55.8 54 51.9
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 6.2e-06 55.5 42 61.9
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 6.2e-06 55.5 52 53.8
Os01g0814400 Oryza sativa ssp. japonica HOM05D033995 ORTHO05D003325 6.2e-06 55.5 63 54.0
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 6.2e-06 55.5 60 53.3
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 8.1e-06 55.1 49 55.1
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 8.1e-06 55.1 48 54.2
SalBow8G2190 Salvia bowleyana HOM05D004206 ORTHO05D003325 8.1e-06 55.1 47 55.3


User provided reference genes

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