Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043912 Camellia sinensis var. sinensis HOM05D008285 ORTHO05D010431 2.2e-21 104.8 54 100.0
Hma1.2p1_0859F.1_g229500 Hydrangea macrophylla HOM05D008285 ORTHO05D010431 1.1e-20 102.4 53 98.1
SalBow1G4672 Salvia bowleyana HOM05D008285 ORTHO05D010431 1.3e-18 95.5 53 90.6
SalBow1G6462 Salvia bowleyana HOM05D008285 ORTHO05D010431 1.3e-18 95.5 53 90.6
Gohir.1Z049931 Gossypium hirsutum HOM05D008285 ORTHO05D010431 5.0e-18 93.6 52 90.4
Gohir.A01G140110 Gossypium hirsutum HOM05D008285 ORTHO05D010431 5.0e-18 93.6 52 90.4
Gohir.A02G134106 Gossypium hirsutum HOM05D008285 ORTHO05D010431 5.0e-18 93.6 52 90.4
Gorai.009G442800 Gossypium raimondii HOM05D008285 ORTHO05D010431 5.0e-18 93.6 52 90.4
Nn031s41612 Nelumbo nucifera HOM05D008285 ORTHO05D010431 5.0e-18 93.6 52 90.4
Nn064s42214 Nelumbo nucifera HOM05D008285 ORTHO05D010431 5.0e-18 93.6 52 90.4
PGR111G0120 Punica granatum HOM05D008285 ORTHO05D010431 5.0e-18 93.6 52 92.3
ATCG01020 Arabidopsis thaliana HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
C09p40390 Brassica napus HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
BolSC29t60502H Brassica oleracea HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
BolSC35t60700H Brassica oleracea HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
BolSC44t60819H Brassica oleracea HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
BraSC103t45425Z Brassica rapa HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
BraSC138t45538Z Brassica rapa HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
BraSC25t45906Z Brassica rapa HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
BraSC59t46547Z Brassica rapa HOM05D008285 ORTHO05D010431 8.6e-18 92.8 50 92.0
HanXRQCPg0580381 Helianthus annuus HOM05D008285 ORTHO05D010431 1.5e-17 92.0 53 90.6
Gohir.1Z049481 Gossypium hirsutum HOM05D008285 ORTHO05D010431 2.5e-17 91.3 52 88.5
BolC9t56809H Brassica oleracea HOM05D008285 ORTHO05D010431 5.5e-17 90.1 50 90.0
PSO548G0110 Papaver somniferum HOM05D008285 ORTHO05D010431 5.5e-17 90.1 53 88.7
Gohir.A12G229600 Gossypium hirsutum HOM05D008285 ORTHO05D010431 7.2e-17 89.7 52 86.5
Nn212s45209 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.2e-16 89.0 53 88.7
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.6e-16 88.6 51 86.3
PGSC0003DMG400000878 Solanum tuberosum HOM05D008285 ORTHO05D010431 1.6e-16 88.6 51 88.2
DCAR_032534 Daucus carota HOM05D008285 ORTHO05D010431 2.8e-16 87.8 50 92.0
Manes.18G138300 Manihot esculenta HOM05D008285 ORTHO05D010431 3.6e-16 87.4 50 88.0
Nn8g41105 Nelumbo nucifera HOM05D008285 ORTHO05D010431 4.7e-16 87.0 52 84.6
BolC9t56929H Brassica oleracea HOM05D008285 ORTHO05D010431 6.1e-16 86.7 50 86.0
C02p28770 Brassica napus HOM05D008285 ORTHO05D010431 8.0e-16 86.3 54 85.2
BolC2t08924H Brassica oleracea HOM05D008285 ORTHO05D010431 8.0e-16 86.3 54 85.2
CARHR282410 Cardamine hirsuta HOM05D008285 ORTHO05D010431 1.4e-15 85.5 50 88.0
RcHm_v2.0_CPg0502841 Rosa chinensis HOM05D008285 ORTHO05D010431 4.0e-15 84.0 54 85.2
BolC2t10592H Brassica oleracea HOM05D008285 ORTHO05D010431 6.8e-15 83.2 46 89.1
Nn1g08636 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.5e-14 82.0 52 80.8
RcHm_v2.0_Chr4g0421191 Rosa chinensis HOM05D008285 ORTHO05D010431 2.0e-14 81.6 54 83.3
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 5.7e-14 80.1 53 75.5
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 2.2e-13 78.2 47 83.0
CAN.G1045.12 Capsicum annuum HOM05D008285 ORTHO05D010431 2.8e-13 77.8 53 75.5
CAN.G1045.15 Capsicum annuum HOM05D008285 ORTHO05D010431 2.8e-13 77.8 53 75.5
CAN.G222.14 Capsicum annuum HOM05D008285 ORTHO05D010431 2.8e-13 77.8 53 75.5
CAN.G413.8 Capsicum annuum HOM05D008285 ORTHO05D010431 2.8e-13 77.8 53 75.5
Solyc03g013610.1 Solanum lycopersicum HOM05D008285 ORTHO05D010431 3.7e-13 77.4 51 80.4
BolSC45t60913H Brassica oleracea HOM05D008285 ORTHO05D010431 4.9e-13 77.0 49 85.7
CAN.G657.10 Capsicum annuum HOM05D008285 ORTHO05D010431 6.3e-13 76.6 51 76.5
CAN.G1431.2 Capsicum annuum HOM05D008285 ORTHO05D010431 8.3e-13 76.3 53 73.6
CAN.G965.8 Capsicum annuum HOM05D008285 ORTHO05D010431 1.4e-12 75.5 53 73.6
SGA_v2.0_scaffold36G14477 Striga asiatica HOM05D008285 ORTHO05D010431 2.4e-12 74.7 46 84.8
CAN.G1324.6 Capsicum annuum HOM05D008285 ORTHO05D010431 3.2e-12 74.3 53 73.6
CAN.G8.24 Capsicum annuum HOM05D008285 ORTHO05D010431 4.1e-12 73.9 53 71.7
Lalb_Chr07g0191721 Lupinus albus HOM05D008285 ORTHO05D010431 4.1e-12 73.9 49 77.6
Nitab4.5_0015353g0010 Nicotiana tabacum HOM05D008285 ORTHO05D010431 1.6e-11 72.0 45 84.4
Medtr4g006140 Medicago truncatula HOM05D008285 ORTHO05D010431 4.5e-11 70.5 44 79.5
CAN.G213.15 Capsicum annuum HOM05D008285 ORTHO05D010431 1.3e-10 68.9 47 74.5
Psat5g142800 Pisum sativum HOM05D008285 ORTHO05D010431 1.7e-10 68.6 46 76.1
Aqoxy1G03262 Aquilegia oxysepala HOM05D008285 ORTHO05D010431 3.9e-10 67.4 53 67.9
CAN.G262.5 Capsicum annuum HOM05D008285 ORTHO05D010431 5.0e-10 67.0 55 69.1
Potri.009G163200 Populus trichocarpa HOM05D008285 ORTHO05D010431 8.0e-08 59.7 45 71.1
Glyma.18G193100 Glycine max HOM05D008285 ORTHO05D010431 8.9e-07 56.2 50 58.0
BraSC58t46459Z Brassica rapa HOM05D067706 ORTHO05D010431 3.4e-06 54.3 45 62.2


User provided reference genes

Program Settings