Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 7.1e-221 770.4 414 100.0
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 9.6e-210 733.4 426 94.6
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 2.8e-44 183.7 532 35.7
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 4.8e-36 156.4 487 35.1
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.7e-33 147.9 570 31.1
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 4.7e-23 113.2 118 56.8
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.6e-21 107.5 430 29.5
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 4.4e-21 106.7 406 31.0
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 7.5e-21 105.9 153 48.4
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 7.5e-21 105.9 213 41.3
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 4.9e-20 103.2 357 33.3
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 6.3e-20 102.8 239 35.6
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 6.3e-20 102.8 120 53.3
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 2.4e-19 100.9 235 37.4
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.4e-19 100.9 403 31.3
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 2.4e-19 100.9 283 35.0
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 5.4e-19 99.8 480 29.0
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 2.0e-18 97.8 388 34.0
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.3e-17 94.4 438 29.5
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 3.8e-17 93.6 445 27.2
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 5.0e-17 93.2 312 34.0
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 1.1e-16 92.0 169 42.0
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.9e-16 91.3 114 48.2
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 1.9e-16 91.3 115 48.7
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 7.3e-16 89.4 122 44.3
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 7.3e-16 89.4 312 32.7
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 7.3e-16 89.4 312 32.7
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 2.8e-15 87.4 448 29.9
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 2.8e-15 87.4 424 30.4
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 8.0e-15 85.9 314 30.6
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.4e-14 85.1 361 30.7
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.8e-14 84.7 295 33.6
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.8e-14 84.7 434 29.5
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 2.3e-14 84.3 437 29.1
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 5.2e-14 83.2 423 28.8
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 2.0e-13 81.3 451 27.3
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 4.4e-13 80.1 188 33.5
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 4.4e-13 80.1 365 28.8
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 7.5e-13 79.3 75 53.3
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 9.8e-13 79.0 444 28.6
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.3e-12 78.6 334 29.6
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.3e-12 78.6 217 33.6
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.7e-12 78.2 205 35.6
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 2.2e-12 77.8 427 27.9
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.2e-12 77.8 90 51.1
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 3.7e-12 77.0 449 26.1
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 3.7e-12 77.0 339 29.5
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.9e-12 76.6 357 28.6
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 6.4e-12 76.3 431 26.7
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 6.4e-12 76.3 465 26.9
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.1e-11 75.5 292 31.8
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 1.4e-11 75.1 439 26.4
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 3.2e-11 73.9 430 24.9
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 7.0e-11 72.8 219 32.0
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 9.2e-11 72.4 73 49.3
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.6e-10 71.6 75 48.0
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 1.6e-10 71.6 402 27.4
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 1.6e-10 71.6 412 26.5
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 4.6e-10 70.1 362 29.3
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 4.6e-10 70.1 389 27.8
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 7.8e-10 69.3 92 41.3
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.3e-09 68.6 425 27.3
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.7e-09 68.2 440 27.3
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 2.3e-09 67.8 90 46.7
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 3.0e-09 67.4 334 28.4
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 3.9e-09 67.0 199 32.7
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 5.0e-09 66.6 203 33.0
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 5.0e-09 66.6 300 33.3
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 8.6e-09 65.9 366 27.3
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 8.6e-09 65.9 326 28.5
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.1e-08 65.5 219 28.3
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.5e-08 65.1 111 36.0
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.5e-08 65.1 202 33.7
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 2.5e-08 64.3 350 28.6
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 3.3e-08 63.9 66 43.9
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 4.3e-08 63.5 204 32.4
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 4.3e-08 63.5 65 46.2
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 5.6e-08 63.2 351 26.8
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 5.6e-08 63.2 295 28.1
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 7.3e-08 62.8 80 42.5
ATR0609G018 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.2e-07 62.0 190 32.1
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.1e-07 61.2 271 28.0
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 2.8e-07 60.8 227 29.5
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.8e-07 60.8 267 26.6
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 3.6e-07 60.5 65 43.1
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 3.6e-07 60.5 65 43.1
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 4.7e-07 60.1 65 41.5
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 4.7e-07 60.1 97 46.4
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 8.0e-07 59.3 66 48.5
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 8.0e-07 59.3 350 26.6
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.1e-06 58.9 65 43.1
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 1.8e-06 58.2 66 45.5
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 2.3e-06 57.8 207 31.4
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.3e-06 57.8 70 40.0
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 3.1e-06 57.4 332 27.1
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 4.0e-06 57.0 282 27.3
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 5.2e-06 56.6 425 24.7
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 5.2e-06 56.6 454 26.4
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 5.2e-06 56.6 81 37.0
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 6.8e-06 56.2 189 28.6


User provided reference genes

Program Settings