Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 6.7e-229 797.0 393 100.0
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 2.3e-189 665.6 454 72.9
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.2e-189 664.5 455 73.6
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 2.7e-185 652.1 461 72.2
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 1.0e-184 650.2 457 71.3
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 1.0e-181 640.2 460 70.4
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 2.4e-178 629.0 457 68.9
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 1.6e-177 626.3 457 68.7
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 4.6e-177 624.8 457 68.7
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 5.0e-176 621.3 459 68.2
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.8e-174 615.5 459 67.3
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 3.1e-173 612.1 455 67.5
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 4.0e-173 611.7 457 66.3
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 8.9e-173 610.5 460 68.3
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 3.2e-170 602.1 460 67.2
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 1.2e-169 600.1 461 67.5
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 7.8e-169 597.4 463 65.0
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 3.0e-168 595.5 459 66.9
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 1.1e-167 593.6 458 65.1
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 3.3e-167 592.0 459 65.8
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 5.6e-167 591.3 462 65.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 1.6e-166 589.7 477 64.4
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 3.6e-166 588.6 459 66.9
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 1.1e-165 587.0 458 66.2
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 1.1e-165 587.0 461 66.4
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 1.8e-165 586.3 466 65.9
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 4.0e-165 585.1 455 63.7
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 1.2e-164 583.6 460 63.3
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 2.0e-164 582.8 459 65.1
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.0e-164 582.8 463 64.8
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 2.0e-164 582.8 463 62.9
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.6e-164 582.4 463 64.8
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 3.4e-164 582.0 463 62.4
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 3.4e-164 582.0 455 65.5
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 1.3e-163 580.1 448 67.0
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 2.2e-163 579.3 461 64.0
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 4.9e-163 578.2 463 64.6
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 4.9e-163 578.2 455 63.1
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.4e-162 576.6 457 65.2
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 1.9e-162 576.2 457 65.0
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 2.4e-162 575.9 461 63.3
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.4e-162 575.9 463 64.1
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 4.1e-162 575.1 464 62.3
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 5.4e-162 574.7 457 64.8
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 1.2e-161 573.5 477 63.9
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 3.5e-161 572.0 461 63.1
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 4.6e-161 571.6 461 62.7
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 4.6e-161 571.6 461 63.6
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 6.0e-161 571.2 455 62.2
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 7.8e-161 570.9 460 63.0
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 1.3e-160 570.1 459 64.7
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.3e-160 570.1 455 65.7
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.1e-160 568.2 464 61.6
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 8.6e-160 567.4 461 62.9
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 1.1e-159 567.0 459 62.3
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.1e-159 567.0 464 61.9
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 1.6e-158 563.1 459 61.7
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 2.8e-158 562.4 452 63.1
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 2.8e-158 562.4 455 63.5
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 6.2e-158 561.2 455 62.2
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 8.1e-158 560.8 455 62.6
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 8.1e-158 560.8 455 62.6
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 1.4e-157 560.1 453 63.6
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 1.8e-157 559.7 460 61.3
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 6.8e-157 557.8 459 63.0
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 2.0e-156 556.2 459 61.9
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 2.0e-156 556.2 464 60.3
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 3.4e-156 555.4 461 62.9
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 7.6e-156 554.3 473 61.5
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 7.6e-156 554.3 461 61.6
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 9.9e-156 553.9 455 62.2
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 1.3e-155 553.5 461 62.3
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 2.2e-155 552.7 502 57.6
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 2.2e-155 552.7 474 62.2
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 2.4e-154 549.3 460 60.7
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 3.2e-154 548.9 461 61.2
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 9.2e-154 547.4 461 60.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 1.2e-153 547.0 460 61.3
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 6.0e-153 544.7 463 63.7
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 8.6e-152 540.8 453 60.0
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 2.8e-150 535.8 468 59.4
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 4.7e-150 535.0 459 59.3
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.5e-148 530.0 461 61.8
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.3e-147 526.9 426 64.3
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 1.1e-146 523.9 431 61.9
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.6e-145 518.5 457 60.4
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 1.7e-144 516.5 513 54.0
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.6e-137 493.4 401 62.6
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 4.6e-137 491.9 455 56.3
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 8.1e-134 481.1 396 60.6
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 2.2e-131 473.0 411 58.6
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 5.5e-130 468.4 460 54.8
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 3.7e-126 455.7 461 52.5
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 5.3e-125 451.8 427 56.7
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 4.1e-117 425.6 462 51.3
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 6.7e-112 408.3 476 49.6
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.4e-108 396.0 299 69.6
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 4.5e-108 395.6 450 46.4
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 1.3e-102 377.5 310 65.8
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 1.2e-100 370.9 414 50.0
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 5.7e-95 352.1 262 65.3
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.1e-93 347.8 330 58.5
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 1.4e-93 347.4 402 45.8
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 3.1e-93 346.3 340 52.6
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 3.2e-90 336.3 299 60.5
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.5e-90 335.5 237 73.0
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 2.1e-89 333.6 227 67.4
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 7.0e-85 318.5 231 67.5
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 1.1e-82 311.2 281 57.7
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 4.2e-74 282.7 256 54.7
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 5.5e-74 282.3 448 42.4
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 1.3e-70 271.2 453 36.4
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 1.6e-68 264.2 465 35.3
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 1.6e-68 264.2 453 37.1
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.0e-68 263.8 452 36.3
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 2.6e-63 246.9 165 70.9
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 9.5e-58 228.4 321 44.9
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.0e-55 220.7 161 64.6
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.2e-52 211.5 119 83.2
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 9.5e-42 175.3 128 70.3
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 4.0e-40 169.9 124 65.3
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 9.9e-39 165.2 227 45.8
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 1.7e-38 164.5 120 66.7
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 3.5e-36 156.8 123 60.2
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 2.0e-23 114.4 106 54.7
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 4.2e-21 106.7 113 55.8
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.5e-18 98.2 94 62.8
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 4.3e-18 96.7 103 48.5
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-12 77.4 280 25.7
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 8.7e-11 72.4 54 66.7


User provided reference genes

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