Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043842 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 2.2e-126 455.7 241 100.0
CSS0035896 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.6e-110 401.0 224 95.1
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 6.8e-107 391.0 217 94.9
CSS0043104 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 5.7e-106 387.9 238 88.2
GSVIVG01008179001 Vitis vinifera HOM05D003462 ORTHO05D003946 7.0e-104 380.9 241 82.2
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 1.2e-103 380.2 241 81.7
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 2.7e-103 379.0 241 82.6
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 3.5e-103 378.6 241 80.5
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 5.9e-103 377.9 241 79.7
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 7.8e-103 377.5 217 92.6
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 5.0e-102 374.8 241 79.7
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 5.0e-102 374.8 237 80.2
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 5.0e-102 374.8 238 79.4
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 1.1e-101 373.6 241 79.7
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 1.1e-101 373.6 241 78.8
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 1.5e-101 373.2 240 80.0
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 1.9e-101 372.9 241 80.1
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 2.5e-101 372.5 241 80.5
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 3.3e-101 372.1 241 80.1
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 3.3e-101 372.1 241 79.3
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 5.6e-101 371.3 241 79.3
vmacro16468 Vaccinium macrocarpon HOM05D003462 ORTHO05D003946 5.6e-101 371.3 241 80.1
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 7.3e-101 370.9 241 79.7
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 1.6e-100 369.8 241 78.4
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 1.6e-100 369.8 241 78.0
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 2.1e-100 369.4 241 79.7
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 2.8e-100 369.0 241 78.0
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 8.0e-100 367.5 241 78.8
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 8.0e-100 367.5 241 78.8
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 8.0e-100 367.5 241 79.7
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 1.0e-99 367.1 238 78.2
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 1.4e-99 366.7 241 78.0
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 2.3e-99 365.9 241 78.0
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 2.3e-99 365.9 241 78.4
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 3.1e-99 365.5 241 78.4
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 5.2e-99 364.8 241 77.2
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 8.9e-99 364.0 242 80.6
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.5e-98 363.2 242 80.6
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 2.0e-98 362.8 241 77.2
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 2.6e-98 362.5 241 78.8
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 2.6e-98 362.5 238 79.0
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 4.4e-98 361.7 241 76.8
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 5.8e-98 361.3 277 70.0
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 5.8e-98 361.3 241 79.3
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 1.3e-97 360.1 241 76.8
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 1.3e-97 360.1 241 77.2
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 1.7e-97 359.8 238 78.2
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 2.2e-97 359.4 241 76.8
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 3.7e-97 358.6 241 76.3
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 3.7e-97 358.6 258 74.4
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 4.9e-97 358.2 241 75.9
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 4.9e-97 358.2 241 75.9
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 6.4e-97 357.8 241 76.3
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 1.1e-96 357.1 241 75.9
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.1e-96 357.1 241 77.6
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 2.4e-96 355.9 238 76.5
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 2.4e-96 355.9 237 76.8
Oeu031926.1 Olea europaea HOM05D003462 ORTHO05D003946 4.1e-96 355.1 237 78.1
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 7.0e-96 354.4 241 76.8
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 1.2e-95 353.6 238 76.5
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 1.6e-95 353.2 241 74.3
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 2.0e-95 352.8 241 73.9
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 2.0e-95 352.8 241 73.4
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 6.0e-95 351.3 241 72.6
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 1.3e-94 350.1 241 74.7
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 3.0e-94 349.0 237 76.8
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 3.0e-94 349.0 241 75.5
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 1.5e-93 346.7 241 75.5
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 1.9e-93 346.3 237 74.3
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 5.6e-93 344.7 241 75.5
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 9.5e-93 344.0 241 74.3
Glyma.06G207100 Glycine max HOM05D003462 ORTHO05D003946 2.1e-92 342.8 241 74.3
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 2.1e-92 342.8 241 73.0
AUR62044517 Chenopodium quinoa HOM05D003462 ORTHO05D003946 3.6e-92 342.0 241 75.5
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 1.4e-91 340.1 241 70.5
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 1.8e-91 339.7 241 73.0
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 1.8e-91 339.7 241 73.9
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 4.0e-91 338.6 241 74.3
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 1.2e-90 337.0 238 71.0
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 7.5e-90 334.3 240 71.7
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 1.7e-89 333.2 238 72.3
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 2.2e-89 332.8 239 71.5
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 3.7e-89 332.0 241 72.2
Actinidia18966 Actinidia chinensis HOM05D003462 ORTHO05D003946 4.9e-89 331.6 228 78.5
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 6.4e-89 331.3 240 71.7
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 1.1e-88 330.5 240 71.2
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 1.1e-88 330.5 240 71.2
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 1.1e-88 330.5 240 71.2
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 1.4e-88 330.1 240 71.2
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 1.4e-88 330.1 240 71.2
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 1.4e-88 330.1 240 71.2
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 2.4e-88 329.3 240 71.2
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 3.2e-88 328.9 240 70.8
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 4.1e-88 328.6 240 70.4
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 9.2e-88 327.4 240 70.4
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 3.9e-86 322.0 241 68.9
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 6.6e-86 321.2 240 69.2
CSS0030762 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.5e-85 320.1 241 75.5
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 4.3e-85 318.5 241 68.9
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 2.8e-84 315.8 241 68.5
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.1e-83 313.9 211 75.8
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 1.4e-83 313.5 238 67.2
SEGI_03657 Sequoiadendron giganteum HOM05D003462 ORTHO05D003946 2.6e-82 309.3 247 69.6
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 9.9e-82 307.4 216 74.1
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 1.3e-81 307.0 228 71.9
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.3e-81 307.0 240 68.8
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 2.2e-81 306.2 238 67.2
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 3.7e-81 305.4 216 73.6
Actinidia01422 Actinidia chinensis HOM05D003462 ORTHO05D003946 1.0e-78 297.4 206 78.2
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.0e-78 297.4 238 67.6
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 5.1e-78 295.0 237 68.4
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 8.1e-76 287.7 241 62.7
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 5.2e-75 285.0 242 64.9
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 2.0e-74 283.1 206 71.4
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 4.4e-74 282.0 238 65.1
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 7.6e-74 281.2 244 63.5
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.7e-73 280.0 242 63.6
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 2.2e-73 279.6 183 79.8
CSS0043461 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.1e-72 277.3 218 72.0
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 2.4e-72 276.2 244 62.3
SMO147G0360 Selaginella moellendorffii HOM05D003462 ORTHO05D003946 5.1e-70 268.5 230 64.3
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 9.6e-69 264.2 160 85.6
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 1.4e-67 260.4 171 80.1
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 3.4e-66 255.8 163 81.6
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 1.4e-64 250.4 166 80.7
AagrBONN_evm.TU.Sc2ySwM_117.3359 Anthoceros agrestis HOM05D003462 ORTHO05D003946 7.1e-64 248.1 213 64.8
Mapoly0008s0093 Marchantia polymorpha HOM05D003462 ORTHO05D003946 2.5e-61 239.6 234 58.1
Pp3c3_13550 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.6e-60 236.9 241 56.8
Pp3c3_13555 Physcomitrium patens HOM05D003462 ORTHO05D003946 1.6e-60 236.9 241 56.8
Actinidia27195 Actinidia chinensis HOM05D003462 ORTHO05D003946 5.1e-54 215.3 205 61.0
Cre10.g444550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 9.6e-53 211.1 178 65.2
AagrBONN_evm.TU.Sc2ySwM_368.89 Anthoceros agrestis HOM05D003462 ORTHO05D003946 6.2e-52 208.4 170 65.9
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 4.5e-50 202.2 165 66.7
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 2.5e-48 196.4 117 86.3
RcHm_v2.0_Chr2g0126491 Rosa chinensis HOM05D003462 ORTHO05D003946 2.5e-48 196.4 201 59.2
FAN13G0008 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.6e-44 183.7 117 81.2
GSVIVG01008177001 Vitis vinifera HOM05D003462 ORTHO05D003946 2.4e-43 179.9 108 85.2
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 2.6e-42 176.4 154 61.0
unitig_749.g14105 Utricularia gibba HOM05D003462 ORTHO05D003946 3.4e-42 176.0 117 76.9
Cc00_g05440 Coffea canephora HOM05D003462 ORTHO05D003946 2.9e-41 172.9 214 50.5
Medtr8g022500 Medicago truncatula HOM05D003462 ORTHO05D003946 3.2e-40 169.5 191 56.5
PGSC0003DMG401024517 Solanum tuberosum HOM05D003462 ORTHO05D003946 4.2e-40 169.1 119 70.6
AUR62039689 Chenopodium quinoa HOM05D003462 ORTHO05D003946 6.1e-39 165.2 141 65.2
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 2.3e-38 163.3 146 63.7
Rhsim08G0140500 Rhododendron simsii HOM05D003462 ORTHO05D003946 3.0e-38 162.9 112 75.9
Medtr4g134260 Medicago truncatula HOM05D003462 ORTHO05D003946 8.7e-38 161.4 195 48.7
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 1.3e-36 157.5 86 93.0
TPR.G35192 Trifolium pratense HOM05D003462 ORTHO05D003946 1.0e-33 147.9 104 73.1
Medtr4g114810 Medicago truncatula HOM05D003462 ORTHO05D003946 2.9e-33 146.4 159 55.3
FAN18G1391 Fragaria x ananassa HOM05D003462 ORTHO05D003946 3.2e-32 142.9 148 58.1
RcHm_v2.0_Chr2g0152701 Rosa chinensis HOM05D003462 ORTHO05D003946 3.2e-32 142.9 191 47.6
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 7.2e-32 141.7 87 81.6
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 1.1e-29 134.4 87 79.3
Cfa017727 Carpinus fangiana HOM05D003462 ORTHO05D003946 4.4e-29 132.5 127 57.5
HanXRQChr09g0240321 Helianthus annuus HOM05D003462 ORTHO05D003946 4.8e-28 129.0 102 64.7
HanXRQChr09g0240811 Helianthus annuus HOM05D003462 ORTHO05D003946 3.1e-27 126.3 102 63.7
RcHm_v2.0_Chr6g0264331 Rosa chinensis HOM05D003462 ORTHO05D003946 4.1e-27 125.9 74 86.5
Cre06.g267700 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 5.3e-27 125.6 176 43.2
unitig_749.g14106 Utricularia gibba HOM05D003462 ORTHO05D003946 1.5e-26 124.0 122 57.4
ECA236G4192 Erigeron canadensis HOM05D003462 ORTHO05D003946 5.9e-26 122.1 78 78.2
Medtr5g025810 Medicago truncatula HOM05D003462 ORTHO05D003946 1.7e-25 120.6 179 43.0
Medtr4g123500 Medicago truncatula HOM05D003462 ORTHO05D003946 3.8e-25 119.4 182 41.2
Medtr4g133130 Medicago truncatula HOM05D000348 ORTHO05D003946 3.8e-25 119.4 173 46.8
Medtr8g022470 Medicago truncatula HOM05D003462 ORTHO05D003946 2.5e-24 116.7 169 45.0
RcHm_v2.0_Chr3g0495421 Rosa chinensis HOM05D003462 ORTHO05D003946 1.4e-22 110.9 116 56.0
CBR_g31190 Chara braunii HOM05D003462 ORTHO05D003946 8.8e-22 108.2 69 78.3
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 5.3e-19 99.0 55 94.5
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 2.2e-17 93.6 180 38.3
Ca_29357_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 2.9e-17 93.2 181 32.6
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 1.1e-16 91.3 53 88.7
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 1.1e-16 91.3 146 45.2
Medtr4g130550 Medicago truncatula HOM05D003462 ORTHO05D003946 1.2e-15 87.8 140 37.9
ECA233G4583 Erigeron canadensis HOM05D003462 ORTHO05D003946 4.7e-15 85.9 155 41.3
ATR0559G066 Amborella trichopoda HOM05D003462 ORTHO05D003946 3.0e-14 83.2 83 50.6
COL.COLO4_01124 Corchorus olitorius HOM05D003462 ORTHO05D003946 5.2e-14 82.4 156 35.3
FvH4_5g13112 Fragaria vesca HOM05D003462 ORTHO05D003946 2.6e-13 80.1 57 68.4
Medtr5g083100 Medicago truncatula HOM05D003462 ORTHO05D003946 4.8e-12 75.9 121 43.0
PRCOL_00001689 Prasinoderma coloniale HOM05D003462 ORTHO05D003946 9.1e-11 71.6 190 31.6
ECA233G4504 Erigeron canadensis HOM05D003462 ORTHO05D003946 1.6e-10 70.9 51 68.6
Cre06.g251550 Chlamydomonas reinhardtii HOM05D003462 ORTHO05D003946 8.5e-09 65.1 154 31.8
Ca_29346_v3 Cicer arietinum L. HOM05D003462 ORTHO05D034612 2.3e-06 57.0 148 34.5


User provided reference genes

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