Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.5e-102 373.6 183 100.0
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.2e-60 236.9 208 64.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 8.1e-60 234.2 178 73.0
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 8.1e-60 234.2 178 73.0
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.0e-59 231.9 205 63.9
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 4.0e-59 231.9 178 72.5
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 5.2e-59 231.5 178 71.9
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 8.9e-59 230.7 180 71.1
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.5e-58 229.9 178 71.3
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.5e-58 229.9 178 71.3
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 2.0e-58 229.6 178 71.3
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 2.6e-58 229.2 178 71.9
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 2.6e-58 229.2 178 71.3
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.6e-58 229.2 178 71.3
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 2.6e-58 229.2 178 71.3
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.6e-58 229.2 178 71.3
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 2.6e-58 229.2 215 62.8
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 3.4e-58 228.8 178 70.8
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 3.4e-58 228.8 178 71.3
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 3.4e-58 228.8 180 71.1
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 3.4e-58 228.8 197 66.0
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 4.4e-58 228.4 183 69.9
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 4.4e-58 228.4 178 71.3
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 4.4e-58 228.4 178 71.3
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 4.4e-58 228.4 202 64.9
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 4.4e-58 228.4 180 70.0
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 4.4e-58 228.4 196 66.3
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 4.4e-58 228.4 180 70.6
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 4.4e-58 228.4 215 62.3
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 5.8e-58 228.0 178 71.3
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 5.8e-58 228.0 201 64.7
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 5.8e-58 228.0 178 71.3
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 5.8e-58 228.0 178 70.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 7.5e-58 227.6 178 71.3
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.5e-58 227.6 178 71.3
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.5e-58 227.6 178 71.3
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.5e-58 227.6 178 71.3
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 7.5e-58 227.6 178 70.8
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 7.5e-58 227.6 177 70.6
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 7.5e-58 227.6 178 71.3
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 7.5e-58 227.6 179 70.4
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 9.9e-58 227.3 203 63.5
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 9.9e-58 227.3 203 63.5
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 71.3
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 9.9e-58 227.3 178 70.8
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 1.3e-57 226.9 203 63.5
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 70.8
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 71.3
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 71.3
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 70.2
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 70.2
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 70.8
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 70.8
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.3e-57 226.9 203 63.1
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 70.8
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.3e-57 226.9 178 70.8
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 1.7e-57 226.5 180 70.0
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.7e-57 226.5 180 70.0
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.7e-57 226.5 178 70.8
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.2e-57 226.1 221 59.7
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 2.2e-57 226.1 206 62.6
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 2.2e-57 226.1 178 70.2
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.2e-57 226.1 193 66.8
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 70.2
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 70.2
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 70.2
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.9e-57 225.7 178 69.7
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.7e-57 225.3 203 63.5
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.7e-57 225.3 203 63.5
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 3.7e-57 225.3 178 69.7
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.7e-57 225.3 203 63.1
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 3.7e-57 225.3 178 70.2
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 3.7e-57 225.3 178 70.2
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 3.7e-57 225.3 196 65.8
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.7e-57 225.3 196 65.8
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.7e-57 225.3 178 70.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 3.7e-57 225.3 178 70.8
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 3.7e-57 225.3 180 69.4
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 4.9e-57 224.9 178 70.2
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.9e-57 224.9 178 70.2
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.9e-57 224.9 178 70.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 4.9e-57 224.9 180 69.4
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 6.4e-57 224.6 178 70.2
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 6.4e-57 224.6 216 60.2
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 6.4e-57 224.6 216 60.2
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 6.4e-57 224.6 216 60.2
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 6.4e-57 224.6 178 69.7
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 6.4e-57 224.6 203 62.6
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.4e-57 224.6 178 70.2
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.4e-57 224.6 178 70.2
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 8.3e-57 224.2 178 69.1
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 8.3e-57 224.2 178 70.2
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 8.3e-57 224.2 178 70.2
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 8.3e-57 224.2 180 68.9
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-56 223.8 215 60.0
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 1.1e-56 223.8 177 68.9
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 1.4e-56 223.4 178 69.7
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.4e-56 223.4 215 60.9
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.4e-56 223.4 178 69.7
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 1.4e-56 223.4 178 69.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.9e-56 223.0 203 63.1
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 2.4e-56 222.6 178 69.1
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 2.4e-56 222.6 196 65.3
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 2.4e-56 222.6 182 68.1
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 3.2e-56 222.2 182 67.6
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 4.1e-56 221.9 178 69.7
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 7.1e-56 221.1 178 68.5
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 2.7e-55 219.2 178 68.0
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 3.5e-55 218.8 178 67.4
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.6e-55 218.4 178 68.0
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 4.6e-55 218.4 178 68.0
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 4.6e-55 218.4 178 68.0
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 1.3e-54 216.9 178 67.4
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 5.1e-54 214.9 208 60.1
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.1e-53 213.8 234 56.0
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 7.3e-53 211.1 176 65.9
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 3.6e-52 208.8 168 69.0
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 1.3e-49 200.3 178 64.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 8.4e-49 197.6 162 69.1
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.6e-47 191.8 178 60.7
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.6e-47 191.8 178 60.7
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 5.1e-46 188.3 166 62.0
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.1e-45 187.2 148 68.2
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 2.5e-45 186.0 147 68.7
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 3.3e-45 185.7 164 62.2
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 9.6e-45 184.1 169 60.4
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 9.6e-45 184.1 146 67.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.6e-44 182.2 156 68.6
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.7e-44 181.8 178 61.2
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 3.4e-42 175.6 148 67.6
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.9e-41 171.8 188 59.0
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.2e-40 169.1 165 58.2
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 4.2e-40 168.7 148 65.5
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.0e-38 164.1 109 75.2
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.1e-37 160.6 196 50.5
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.6e-36 156.8 166 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.1e-35 154.1 135 60.0
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.2e-34 150.6 137 62.8
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.7e-33 146.7 166 48.8
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 9.3e-32 141.0 91 76.9
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 6.0e-31 138.3 132 62.1
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.9e-29 133.3 87 75.9
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 5.6e-29 131.7 162 47.5
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.4e-27 127.1 87 71.3
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 2.6e-26 122.9 126 55.6
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 9.3e-24 114.4 92 69.6
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.1e-21 107.5 169 44.4
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 4.3e-21 105.5 129 51.9
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 2.2e-17 93.2 82 63.4
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 4.9e-17 92.0 82 62.2
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 1.0e-14 84.3 77 63.6
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.6e-07 60.5 61 55.7
Actinidia08227 Actinidia chinensis HOM05D004278 ORTHO05D021139 8.8e-06 54.7 75 45.3


User provided reference genes

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