Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043809 Camellia sinensis var. sinensis HOM05D002065 ORTHO05D002050 6.5e-105 384.0 190 100.0
Rhsim13G0158100 Rhododendron simsii HOM05D002065 ORTHO05D002050 3.5e-34 149.1 191 46.1
CSS0011359 Camellia sinensis var. sinensis HOM05D002065 ORTHO05D002050 6.0e-34 148.3 186 48.4
Hma1.2p1_0729F.1_g209610 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 8.4e-28 127.9 186 44.1
Prupe.4G026900 Prunus persica HOM05D002065 ORTHO05D002050 9.3e-27 124.4 186 41.9
Actinidia05537 Actinidia chinensis HOM05D002065 ORTHO05D002050 1.6e-26 123.6 151 44.4
TAR629G2849 Trochodendron aralioides HOM05D002065 ORTHO05D002050 1.6e-26 123.6 187 41.7
QL05p075313 Quercus lobata HOM05D002065 ORTHO05D002050 6.1e-26 121.7 185 42.2
Actinidia26952 Actinidia chinensis HOM05D002065 ORTHO05D002050 1.0e-25 120.9 150 44.7
Prupe.4G027000 Prunus persica HOM05D002065 ORTHO05D002050 1.0e-25 120.9 186 40.9
Dinv18891 Davidia involucrata HOM05D002065 ORTHO05D002050 3.0e-25 119.4 179 40.8
Dinv20008 Davidia involucrata HOM05D002065 ORTHO05D002050 3.0e-25 119.4 178 40.4
MD10G1314100 Malus domestica HOM05D002065 ORTHO05D002050 3.0e-25 119.4 186 41.4
MD05G1340600 Malus domestica HOM05D002065 ORTHO05D002050 8.7e-25 117.9 182 39.6
Cfa021640 Carpinus fangiana HOM05D002065 ORTHO05D002050 2.5e-24 116.3 163 44.2
Gohir.D10G015700 Gossypium hirsutum HOM05D002065 ORTHO05D002050 2.5e-24 116.3 182 39.6
Nn1g07008 Nelumbo nucifera HOM05D002065 ORTHO05D002050 7.4e-24 114.8 186 38.2
CiPaw.09G085400 Carya illinoinensis HOM05D002065 ORTHO05D002050 2.2e-23 113.2 184 41.3
Gorai.011G017400 Gossypium raimondii HOM05D002065 ORTHO05D002050 3.7e-23 112.5 182 39.0
CiPaw.09G086400 Carya illinoinensis HOM05D002065 ORTHO05D002050 6.3e-23 111.7 184 40.8
Duzib235G0538 Durio zibethinus HOM05D002065 ORTHO05D002050 1.4e-22 110.5 186 38.2
FAN25G0723 Fragaria x ananassa HOM05D002065 ORTHO05D002050 3.1e-22 109.4 185 38.9
Lj1g0010741 Lotus japonicus HOM05D002065 ORTHO05D002050 3.1e-22 109.4 183 38.8
Manes.17G029300 Manihot esculenta HOM05D002065 ORTHO05D002050 3.1e-22 109.4 185 38.4
FvH4_3g02720 Fragaria vesca HOM05D002065 ORTHO05D002050 5.3e-22 108.6 183 37.7
MBI18_g40467_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 6.9e-22 108.2 185 35.7
FAN21G3944 Fragaria x ananassa HOM05D002065 ORTHO05D002050 1.5e-21 107.1 183 38.8
RcHm_v2.0_Chr5g0004121 Rosa chinensis HOM05D002065 ORTHO05D002050 4.5e-21 105.5 185 38.9
MBI18_g06812_MAGBIO Magnolia biondii HOM05D004864 ORTHO05D002050 5.9e-21 105.1 162 37.0
Gohir.A10G015700 Gossypium hirsutum HOM05D002065 ORTHO05D002050 7.7e-21 104.8 182 37.4
Duzib192G0918 Durio zibethinus HOM05D002065 ORTHO05D002050 1.3e-20 104.0 181 36.5
PSO675G3505 Papaver somniferum HOM05D002065 ORTHO05D002050 5.0e-20 102.1 186 37.1
Gohir.A06G144950 Gossypium hirsutum HOM05D002065 ORTHO05D002050 6.5e-20 101.7 185 36.2
Cpa.g.sc81.25 Carica papaya HOM05D002065 ORTHO05D002050 8.5e-20 101.3 186 37.1
Thecc.06G213400 Theobroma cacao HOM05D002065 ORTHO05D002050 8.5e-20 101.3 181 33.1
TWI38G0471 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 8.5e-20 101.3 184 39.1
Gohir.D06G151332 Gossypium hirsutum HOM05D002065 ORTHO05D002050 1.9e-19 100.1 182 36.3
Gorai.010G176400 Gossypium raimondii HOM05D002065 ORTHO05D002050 1.9e-19 100.1 182 36.3
COL.COLO4_31720 Corchorus olitorius HOM05D004864 ORTHO05D005393 3.2e-19 99.4 155 38.1
PGR004G0337 Punica granatum HOM05D002065 ORTHO05D002050 4.6e-18 95.5 164 36.0
Medtr7g109260 Medicago truncatula HOM05D002065 ORTHO05D002050 7.9e-18 94.7 184 37.0
Aqoxy4G02006 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 1.0e-17 94.4 187 32.6
Potri.004G023400 Populus trichocarpa HOM05D002065 ORTHO05D002050 1.0e-17 94.4 187 33.2
Glyma.11G003000 Glycine max HOM05D002065 ORTHO05D002050 2.3e-17 93.2 127 44.1
VMungo1215G2268 Vigna mungo HOM05D002065 ORTHO05D002050 6.7e-17 91.7 184 35.3
Gohir.D10G015750 Gossypium hirsutum HOM05D002065 ORTHO05D002050 2.0e-16 90.1 189 31.7
Gorai.011G017500 Gossypium raimondii HOM05D002065 ORTHO05D002050 2.0e-16 90.1 189 31.7
TPR.G20274 Trifolium pratense HOM05D002065 ORTHO05D002050 9.7e-16 87.8 159 38.4
Gohir.A10G015750 Gossypium hirsutum HOM05D002065 ORTHO05D002050 2.8e-15 86.3 189 31.2
Nn1g03650 Nelumbo nucifera HOM05D002065 ORTHO05D002050 4.8e-15 85.5 184 32.1
Haze_06727 Corylus avellana HOM05D004864 ORTHO05D005393 4.1e-14 82.4 107 46.7
Haze_06730 Corylus avellana HOM05D004864 ORTHO05D005393 4.1e-14 82.4 107 46.7
Sabra04G0012800 Salix brachista HOM05D004864 ORTHO05D005393 4.1e-14 82.4 176 32.4
Ciclev10016810m.g Citrus clementina HOM05D002065 ORTHO05D002050 5.3e-14 82.0 187 33.2
Psat3g020720 Pisum sativum HOM05D002065 ORTHO05D002050 6.9e-14 81.6 183 33.9
Eucgr.D00820 Eucalyptus grandis HOM05D002065 ORTHO05D002050 2.0e-13 80.1 102 41.2
ATR0794G125 Amborella trichopoda HOM05D002065 ORTHO05D002050 2.6e-13 79.7 180 33.9
ATR0794G057 Amborella trichopoda HOM05D002065 ORTHO05D002050 5.9e-13 78.6 183 32.8
AUR62022020 Chenopodium quinoa HOM05D000128 ORTHO05D000059 5.9e-13 78.6 162 33.3
AUR62012636 Chenopodium quinoa HOM05D002065 ORTHO05D002050 1.3e-12 77.4 162 34.0
TAR626G1859 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.9e-12 76.3 176 31.8
Ciclev10017718m.g Citrus clementina HOM05D002065 ORTHO05D002050 5.5e-11 72.0 179 27.9
TWI38G1606 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.2e-10 70.9 180 29.4
Hma1.2p1_0729F.1_g209600 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 3.6e-10 69.3 165 29.7
Cfa021641 Carpinus fangiana HOM05D002065 ORTHO05D002050 1.8e-09 67.0 177 27.1
QL05p075311 Quercus lobata HOM05D002065 ORTHO05D002050 1.1e-08 64.3 187 25.1
CSS0011499 Camellia sinensis var. sinensis HOM05D002065 ORTHO05D002050 1.5e-08 63.9 164 26.2
CiPaw.09G086500 Carya illinoinensis HOM05D002065 ORTHO05D002050 2.6e-08 63.2 182 28.0
TPR.G20296 Trifolium pratense HOM05D002065 ORTHO05D002050 3.3e-08 62.8 90 43.3
Oeu007632.1 Olea europaea HOM05D002065 ORTHO05D002050 4.4e-08 62.4 162 25.3
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 9.7e-08 61.2 162 28.4
Oeu007631.2 Olea europaea HOM05D002065 ORTHO05D002050 9.7e-08 61.2 162 25.3
BcaB04g19117 Brassica carinata HOM05D002065 ORTHO05D002050 2.2e-07 60.1 158 24.1
PGSC0003DMG400032231 Solanum tuberosum HOM05D002065 ORTHO05D002050 2.8e-07 59.7 162 26.5
BcaB04g20643 Brassica carinata HOM05D002065 ORTHO05D002050 1.4e-06 57.4 158 22.8
A03p41840 Brassica napus HOM05D002065 ORTHO05D002050 1.8e-06 57.0 158 23.4
BraA03t13337Z Brassica rapa HOM05D002065 ORTHO05D002050 1.8e-06 57.0 158 23.4
BcaC09g49003 Brassica carinata HOM05D002065 ORTHO05D002050 2.4e-06 56.6 158 22.2
BolC1t04321H Brassica oleracea HOM05D002065 ORTHO05D002050 2.4e-06 56.6 158 22.2
Duzib235G0905 Durio zibethinus HOM05D002065 ORTHO05D002050 2.4e-06 56.6 211 26.5
TWI38G1319 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 2.4e-06 56.6 176 26.7
A01p34210 Brassica napus HOM05D002065 ORTHO05D002050 3.1e-06 56.2 158 22.2
BraA01t03521Z Brassica rapa HOM05D002065 ORTHO05D002050 3.1e-06 56.2 158 22.2
BcaC01g03546 Brassica carinata HOM05D002065 ORTHO05D002050 5.3e-06 55.5 158 23.4
C03p51220 Brassica napus HOM05D002065 ORTHO05D002050 5.3e-06 55.5 158 23.4
BolC3t17412H Brassica oleracea HOM05D002065 ORTHO05D002050 5.3e-06 55.5 158 23.4


User provided reference genes

Program Settings