Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 0.0e+00 1245.0 619 100.0
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 0.0e+00 1237.2 619 99.4
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.9e-295 1018.1 619 82.1
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 7.9e-293 1010.0 632 80.4
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.4e-275 951.0 657 75.5
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 2.9e-271 938.3 619 76.6
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 1.3e-266 922.9 619 73.7
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.7e-266 922.5 619 74.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.8e-265 919.1 619 73.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 4.1e-265 917.9 619 73.0
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 1.2e-264 916.4 619 72.7
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.5e-262 909.4 624 73.1
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 2.6e-259 898.7 619 71.4
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.8e-257 892.5 619 72.1
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 3.1e-257 891.7 621 70.7
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.1e-254 883.2 525 83.6
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.8e-252 875.9 619 69.3
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.7e-250 869.4 622 68.6
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.1e-249 866.7 626 69.2
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 7.0e-249 864.0 621 70.5
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 9.2e-249 863.6 619 70.0
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.0e-247 860.1 622 68.5
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.1e-246 856.7 622 68.0
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.5e-246 856.3 619 67.7
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 7.3e-246 854.0 626 69.8
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.2e-245 853.2 619 69.0
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 4.7e-245 851.3 622 67.5
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.0e-243 845.9 619 68.5
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 2.2e-242 842.4 625 68.3
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 2.7e-240 835.5 628 68.0
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 5.0e-239 831.2 626 67.4
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 7.3e-238 827.4 622 65.8
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.8e-237 825.5 623 65.8
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 2.3e-236 822.4 622 66.6
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 2.6e-235 818.9 584 71.2
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 6.4e-234 814.3 623 65.8
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 5.4e-233 811.2 622 65.9
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.6e-232 809.7 624 64.9
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 2.3e-231 805.8 655 62.4
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.1e-229 799.3 619 64.9
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 4.7e-229 798.1 624 64.7
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 3.1e-228 795.4 626 64.9
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 5.2e-228 794.7 623 64.2
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 9.9e-227 790.4 622 63.7
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.3e-226 790.0 628 62.9
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.1e-225 786.9 623 63.6
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.4e-225 786.6 628 62.6
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 2.3e-223 779.2 602 65.3
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 2.3e-223 779.2 624 62.8
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 5.1e-223 778.1 627 63.6
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 8.6e-223 777.3 625 62.4
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.6e-222 774.6 624 62.5
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.4e-220 770.0 619 62.5
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.1e-220 768.8 625 61.9
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 4.0e-220 768.5 624 63.0
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 6.9e-220 767.7 626 62.0
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.5e-219 766.5 621 61.8
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 3.4e-219 765.4 626 62.9
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.2e-218 762.7 622 62.2
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 6.4e-218 761.1 623 62.3
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 6.4e-218 761.1 621 61.0
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.4e-217 760.0 630 61.3
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.9e-217 759.6 622 61.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.9e-217 759.6 625 62.1
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.9e-217 759.6 627 62.4
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.4e-217 759.2 622 61.7
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.2e-217 758.8 638 60.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 5.4e-217 758.1 622 61.3
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 4.6e-216 755.0 624 61.2
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 1.7e-215 753.1 625 60.8
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.3e-215 752.7 624 62.2
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 3.9e-215 751.9 624 60.7
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 5.1e-215 751.5 624 60.7
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.5e-214 750.0 621 61.2
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.5e-214 750.0 621 61.2
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.5e-214 749.2 621 61.4
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.3e-214 748.8 625 60.8
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 4.3e-214 748.4 625 60.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 5.6e-214 748.0 633 61.8
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.1e-213 746.1 621 60.9
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 2.1e-213 746.1 621 60.9
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.1e-212 743.8 621 60.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.9e-212 741.1 614 62.2
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 4.5e-211 738.4 623 61.2
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 9.9e-211 737.3 619 62.2
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 2.2e-210 736.1 623 60.5
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.1e-209 733.8 630 60.0
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.4e-209 732.6 693 56.6
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 7.9e-208 727.6 628 60.0
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 4.8e-205 718.4 626 59.9
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 6.2e-205 718.0 661 56.9
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.0e-203 713.0 687 55.3
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 4.5e-203 711.8 567 62.8
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 2.2e-202 709.5 529 65.8
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.9e-198 696.4 617 58.7
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 3.1e-196 689.1 634 55.4
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 4.2e-193 678.7 612 57.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.1e-190 670.6 622 55.9
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 8.7e-183 644.4 624 54.0
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.4e-169 597.8 405 78.0
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 4.1e-164 582.4 627 50.4
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.0e-163 580.1 645 49.0
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.0e-163 580.1 645 49.0
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.3e-162 577.4 641 49.1
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 6.7e-159 565.1 620 49.8
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-158 564.3 408 73.0
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.4e-156 556.6 488 60.7
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.5e-153 546.6 626 48.4
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 5.5e-145 518.8 660 45.2
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.5e-142 510.8 635 44.1
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 3.7e-141 506.1 533 50.8
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 9.8e-134 481.5 386 61.1
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 7.8e-131 471.9 406 58.4
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 7.0e-124 448.7 581 42.9
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.0e-114 418.3 468 46.4
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.3e-82 311.6 751 30.5
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 7.9e-75 285.8 416 38.7
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 2.1e-67 261.2 641 31.8
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 6.1e-67 259.6 270 52.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.7e-64 251.5 130 93.8
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.3e-64 249.6 248 50.8
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 1.9e-60 238.0 215 55.8
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.3e-50 204.5 164 61.6
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 5.7e-49 199.9 389 33.2
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-43 181.8 143 62.2
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 4.1e-39 167.2 154 59.7
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.4e-36 156.0 529 26.8
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 9.4e-36 156.0 243 41.6
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 4.4e-33 147.1 164 47.6
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.3e-29 135.6 150 50.0
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.9e-29 134.4 103 63.1
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 8.6e-29 132.9 124 55.6
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.1e-27 128.3 148 47.3
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.8e-27 127.9 95 70.5
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 4.5e-22 110.5 123 51.2
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.6e-17 94.7 155 41.9
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 9.8e-17 92.8 81 59.3
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 6.4e-16 90.1 65 63.1
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 9.2e-15 86.3 68 60.3
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 1.2e-14 85.9 101 45.5
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.2e-14 85.9 65 63.1
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.2e-11 75.9 53 67.9
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 6.2e-11 73.6 76 48.7
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 2.6e-09 68.2 54 57.4
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 5.8e-09 67.0 65 52.3
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 2.2e-08 65.1 51 58.8
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.2e-08 65.1 49 63.3
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 6.4e-08 63.5 52 57.7
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 4.1e-07 60.8 41 63.4
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 7.0e-07 60.1 34 76.5
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 1.2e-06 59.3 45 66.7
Lsat_1_v5_gn_4_100620 Lactuca sativa HOM05D001733 ORTHO05D001882 2.7e-06 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 3.5e-06 57.8 130 36.2


User provided reference genes

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