Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043804 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 4.0e-30 134.0 64 100.0
Potri.010G088200 Populus trichocarpa HOM05D006086 ORTHO05D007396 9.2e-19 96.3 64 76.6
Gohir.A02G031700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.2e-18 95.9 63 73.0
Gohir.D02G038400 Gossypium hirsutum HOM05D006086 ORTHO05D007396 1.2e-18 95.9 63 73.0
Gorai.005G042300 Gossypium raimondii HOM05D006086 ORTHO05D007396 1.2e-18 95.9 63 73.0
Potri.008G152200 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.3e-17 92.4 64 73.4
HPP92_015928 Vanilla planifolia HOM05D006086 ORTHO05D007396 1.7e-17 92.0 64 68.8
BolC3t17520H Brassica oleracea HOM05D006086 ORTHO05D007396 2.3e-17 91.7 64 68.8
Prupe.7G268200 Prunus persica HOM05D006086 ORTHO05D007396 3.0e-17 91.3 54 77.8
CiPaw.07G090400 Carya illinoinensis HOM05D006086 ORTHO05D007396 5.0e-17 90.5 62 71.0
Manes.15G028500 Manihot esculenta HOM05D006086 ORTHO05D007396 5.0e-17 90.5 64 71.9
Thecc.01G143500 Theobroma cacao HOM05D006086 ORTHO05D007396 5.0e-17 90.5 63 66.7
arahy.Tifrunner.gnm1.ann1.GC569L Arachis hypogaea HOM05D006086 ORTHO05D007396 6.6e-17 90.1 64 71.9
arahy.Tifrunner.gnm1.ann1.I5363L Arachis hypogaea HOM05D006086 ORTHO05D007396 6.6e-17 90.1 64 71.9
Gohir.A09G215300 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.6e-17 90.1 54 79.6
Gohir.D09G217800 Gossypium hirsutum HOM05D006086 ORTHO05D007396 6.6e-17 90.1 54 79.6
MD13G1192200 Malus domestica HOM05D006086 ORTHO05D007396 6.6e-17 90.1 58 72.4
arahy.Tifrunner.gnm1.ann1.K13GF2 Arachis hypogaea HOM05D006086 ORTHO05D007396 8.6e-17 89.7 65 72.3
Manes.03G179500 Manihot esculenta HOM05D006086 ORTHO05D007396 8.6e-17 89.7 64 70.3
Medtr7g095120 Medicago truncatula HOM05D006086 ORTHO05D007396 8.6e-17 89.7 63 68.3
A05p26350 Brassica napus HOM05D006086 ORTHO05D007396 1.1e-16 89.4 64 70.3
BraA05t21510Z Brassica rapa HOM05D006086 ORTHO05D007396 1.1e-16 89.4 64 70.3
CsaV3_3G013360 Cucumis sativus L. HOM05D006086 ORTHO05D007396 1.1e-16 89.4 54 77.8
Sed0006679 Sechium edule HOM05D006086 ORTHO05D007396 1.1e-16 89.4 54 77.8
CSS0045022 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.5e-16 89.0 64 68.8
Glyma.03G155400 Glycine max HOM05D006086 ORTHO05D007396 1.5e-16 89.0 54 75.9
Glyma.20G145600 Glycine max HOM05D006086 ORTHO05D007396 1.5e-16 89.0 64 70.3
Lalb_Chr05g0210971 Lupinus albus HOM05D006086 ORTHO05D007396 1.5e-16 89.0 64 70.3
RcHm_v2.0_Chr4g0416351 Rosa chinensis HOM05D006086 ORTHO05D007396 1.5e-16 89.0 61 72.1
arahy.Tifrunner.gnm1.ann1.NA8V5S Arachis hypogaea HOM05D006086 ORTHO05D007396 1.9e-16 88.6 65 70.8
FvH4_4g15440 Fragaria vesca HOM05D006086 ORTHO05D007396 1.9e-16 88.6 59 72.9
FAN12G3621 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.9e-16 88.6 59 72.9
FAN17G2927 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.9e-16 88.6 59 72.9
FAN22G1306 Fragaria x ananassa HOM05D006086 ORTHO05D007396 1.9e-16 88.6 59 72.9
Glyma.01G238500 Glycine max HOM05D006086 ORTHO05D007396 1.9e-16 88.6 59 72.9
Lj5g0007110 Lotus japonicus HOM05D006086 ORTHO05D007396 1.9e-16 88.6 64 68.8
MD15G1146200 Malus domestica HOM05D006086 ORTHO05D007396 1.9e-16 88.6 54 74.1
MD16G1192800 Malus domestica HOM05D006086 ORTHO05D007396 1.9e-16 88.6 58 72.4
Nn1g02292 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.5e-16 88.2 54 72.2
Phvul.002G045900 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 2.5e-16 88.2 57 75.4
Glyma.10G248500 Glycine max HOM05D006086 ORTHO05D007396 3.3e-16 87.8 64 68.8
Glyma.11G005000 Glycine max HOM05D006086 ORTHO05D007396 3.3e-16 87.8 58 74.1
Oeu034961.1 Olea europaea HOM05D006086 ORTHO05D007396 3.3e-16 87.8 54 72.2
Phvul.001G152800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 3.3e-16 87.8 54 75.9
Carub.0003s2258 Capsella rubella HOM05D006086 ORTHO05D007396 4.3e-16 87.4 64 68.8
Migut.G00335 Erythranthe guttata HOM05D006086 ORTHO05D007396 4.3e-16 87.4 54 77.8
Glyma.19G157600 Glycine max HOM05D006086 ORTHO05D007396 4.3e-16 87.4 54 74.1
MD02G1003000 Malus domestica HOM05D006086 ORTHO05D007396 4.3e-16 87.4 54 72.2
Manes.05G077700 Manihot esculenta HOM05D006086 ORTHO05D007396 4.3e-16 87.4 64 64.1
Zm00001eb151540 Zea mays HOM05D006086 ORTHO05D007396 4.3e-16 87.4 54 72.2
Sed0017079 Sechium edule HOM05D006086 ORTHO05D007396 5.6e-16 87.0 55 69.1
Lalb_Chr23g0273411 Lupinus albus HOM05D006086 ORTHO05D007396 7.3e-16 86.7 59 71.2
Nitab4.5_0000043g0210 Nicotiana tabacum HOM05D006086 ORTHO05D007396 7.3e-16 86.7 59 71.2
Nitab4.5_0012971g0020 Nicotiana tabacum HOM05D006086 ORTHO05D007396 7.3e-16 86.7 59 71.2
Solyc09g075980.3 Solanum lycopersicum HOM05D006086 ORTHO05D007396 7.3e-16 86.7 59 71.2
PGSC0003DMG400030088 Solanum tuberosum HOM05D006086 ORTHO05D007396 7.3e-16 86.7 59 71.2
CiPaw.01G165300 Carya illinoinensis HOM05D006086 ORTHO05D007396 9.5e-16 86.3 54 77.8
Lj1g0005264 Lotus japonicus HOM05D006086 ORTHO05D007396 9.5e-16 86.3 54 72.2
Os07g0572400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 9.5e-16 86.3 55 72.7
Thecc.04G230800 Theobroma cacao HOM05D006086 ORTHO05D007396 9.5e-16 86.3 54 77.8
Atru.ctg752_3.89 Acer truncatum HOM05D006086 ORTHO05D007396 1.2e-15 85.9 54 75.9
CAN.G907.3 Capsicum annuum HOM05D006086 ORTHO05D007396 1.2e-15 85.9 54 75.9
Phvul.007G056800 Phaseolus vulgaris HOM05D006086 ORTHO05D007396 1.2e-15 85.9 63 66.7
Cc03_g03710 Coffea canephora HOM05D006086 ORTHO05D007396 1.6e-15 85.5 54 77.8
Potri.005G211000 Populus trichocarpa HOM05D006086 ORTHO05D007396 1.6e-15 85.5 54 72.2
Medtr1g104520 Medicago truncatula HOM05D006086 ORTHO05D007396 2.1e-15 85.1 59 67.8
Nn4g26304 Nelumbo nucifera HOM05D006086 ORTHO05D007396 2.1e-15 85.1 63 66.7
Os03g0806800 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 2.1e-15 85.1 54 74.1
Psat3g063680 Pisum sativum HOM05D006086 ORTHO05D007396 2.1e-15 85.1 64 67.2
Gorai.006G238700 Gossypium raimondii HOM05D006086 ORTHO05D007396 2.8e-15 84.7 54 77.8
GSVIVG01017965001 Vitis vinifera HOM05D006086 ORTHO05D007396 2.8e-15 84.7 64 68.8
AL3G36690 Arabidopsis lyrata HOM05D006086 ORTHO05D007396 3.6e-15 84.3 64 67.2
Thecc.05G288200 Theobroma cacao HOM05D006086 ORTHO05D007396 3.6e-15 84.3 64 68.8
TAR633G0013 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.7e-15 84.0 64 67.2
EL10Ac3g06420 Beta vulgaris HOM05D006086 ORTHO05D007396 6.2e-15 83.6 55 72.7
Lalb_Chr02g0142691 Lupinus albus HOM05D006086 ORTHO05D007396 6.2e-15 83.6 57 64.9
Os01g0778500 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 6.2e-15 83.6 54 70.4
GSVIVG01021842001 Vitis vinifera HOM05D006086 ORTHO05D007396 6.2e-15 83.6 64 67.2
CSS0028415 Camellia sinensis var. sinensis HOM05D006086 ORTHO05D007396 1.4e-14 82.4 64 62.5
DCAR_030633 Daucus carota HOM05D006086 ORTHO05D007396 1.4e-14 82.4 54 74.1
Oeu023395.1 Olea europaea HOM05D006086 ORTHO05D007396 1.4e-14 82.4 54 74.1
SalBow2G3603 Salvia bowleyana HOM05D006086 ORTHO05D007396 1.4e-14 82.4 54 74.1
CiPaw.08G106900 Carya illinoinensis HOM05D006086 ORTHO05D007396 1.8e-14 82.0 54 70.4
DCAR_027212 Daucus carota HOM05D006086 ORTHO05D007396 1.8e-14 82.0 54 72.2
Hund09501 Selenicereus undatus HOM05D006086 ORTHO05D007396 3.1e-14 81.3 64 62.5
Medtr5g006200 Medicago truncatula HOM05D006086 ORTHO05D007396 4.0e-14 80.9 61 67.2
Oeu011629.1 Olea europaea HOM05D006086 ORTHO05D007396 4.0e-14 80.9 64 65.6
TAR636G0808 Trochodendron aralioides HOM05D006086 ORTHO05D007396 4.0e-14 80.9 64 64.1
Gohir.A11G255000 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.2e-14 80.5 64 65.6
Gohir.D11G264700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 5.2e-14 80.5 64 65.6
Gorai.007G284800 Gossypium raimondii HOM05D006086 ORTHO05D007396 5.2e-14 80.5 64 65.6
HanXRQChr15g0492031 Helianthus annuus HOM05D006086 ORTHO05D007396 5.2e-14 80.5 54 72.2
Os07g0204400 Oryza sativa ssp. japonica HOM05D006086 ORTHO05D007396 5.2e-14 80.5 54 68.5
Prupe.1G012900 Prunus persica HOM05D006086 ORTHO05D007396 5.2e-14 80.5 62 67.7
A01p32670 Brassica napus HOM05D006086 ORTHO05D007396 6.8e-14 80.1 58 67.2
CsaV3_7G028010 Cucumis sativus L. HOM05D006086 ORTHO05D007396 6.8e-14 80.1 56 64.3
C01p41850 Brassica napus HOM05D006086 ORTHO05D007396 8.9e-14 79.7 58 67.2
BolC1t04139H Brassica oleracea HOM05D006086 ORTHO05D007396 8.9e-14 79.7 58 67.2
Dinv32919 Davidia involucrata HOM05D001893 ORTHO05D007396 8.9e-14 79.7 48 77.1
Dinv44531 Davidia involucrata HOM05D006086 ORTHO05D007396 8.9e-14 79.7 58 67.2
Gohir.D11G232700 Gossypium hirsutum HOM05D006086 ORTHO05D007396 8.9e-14 79.7 63 60.3
Gorai.003G066200 Gossypium raimondii HOM05D006086 ORTHO05D007396 8.9e-14 79.7 63 60.3
Sed0021654 Sechium edule HOM05D006086 ORTHO05D007396 8.9e-14 79.7 54 74.1
Psat4g210480 Pisum sativum HOM05D006086 ORTHO05D007396 1.2e-13 79.3 61 60.7
ClCG09G007150 Citrullus lanatus HOM05D006086 ORTHO05D007396 1.5e-13 79.0 59 61.0
Lsat_1_v5_gn_7_65621 Lactuca sativa HOM05D006086 ORTHO05D007396 1.5e-13 79.0 54 70.4
CARHR098310 Cardamine hirsuta HOM05D006086 ORTHO05D007396 2.0e-13 78.6 59 67.8
Zm00001eb107360 Zea mays HOM05D006086 ORTHO05D007396 2.6e-13 78.2 54 66.7
BraA01t03396Z Brassica rapa HOM05D006086 ORTHO05D007396 3.4e-13 77.8 58 65.5
COL.COLO4_12126 Corchorus olitorius HOM05D006086 ORTHO05D007396 3.4e-13 77.8 55 65.5
Hma1.2p1_3079F.1_g332420 Hydrangea macrophylla HOM05D006086 ORTHO05D007396 3.4e-13 77.8 59 62.7
Oeu031234.1 Olea europaea HOM05D006086 ORTHO05D007396 3.4e-13 77.8 54 68.5
ECA240G3083 Erigeron canadensis HOM05D006086 ORTHO05D007396 1.3e-12 75.9 54 68.5
Lalb_Chr07g0189661 Lupinus albus HOM05D006086 ORTHO05D007396 2.2e-12 75.1 53 64.2
ATR0737G002 Amborella trichopoda HOM05D006086 ORTHO05D007396 2.9e-12 74.7 65 58.5
Cc07_g10970 Coffea canephora HOM05D006086 ORTHO05D007396 3.7e-12 74.3 55 63.6
HanXRQChr04g0118911 Helianthus annuus HOM05D006086 ORTHO05D007396 3.7e-12 74.3 55 63.6
Lsat_1_v5_gn_8_56520 Lactuca sativa HOM05D006086 ORTHO05D007396 4.9e-12 73.9 55 65.5
BraA03t13422Z Brassica rapa HOM05D006086 ORTHO05D007396 1.4e-11 72.4 49 69.4
Potri.013G037800 Populus trichocarpa HOM05D006086 ORTHO05D007396 2.4e-11 71.6 65 61.5
BolC5t32839H Brassica oleracea HOM05D006086 ORTHO05D007396 5.4e-11 70.5 57 63.2
Actinidia00772 Actinidia chinensis HOM05D001893 ORTHO05D001914 7.8e-10 66.6 45 66.7
Manes.09G155600 Manihot esculenta HOM05D006086 ORTHO05D007396 7.8e-10 66.6 55 60.0
Medtr5g006220 Medicago truncatula HOM05D006086 ORTHO05D007396 3.9e-09 64.3 54 59.3
Rhsim02G0023700 Rhododendron simsii HOM05D006086 ORTHO05D007396 5.6e-08 60.5 36 77.8
SEGI_12043 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 1.2e-07 59.3 54 50.0
SMO290G0006 Selaginella moellendorffii HOM05D002570 ORTHO05D002689 3.1e-06 54.7 61 42.6
SEGI_00264 Sequoiadendron giganteum HOM05D006086 ORTHO05D007396 5.2e-06 53.9 55 45.5


User provided reference genes

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