Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043794 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 1.1e-40 169.5 79 100.0
Aqoxy6G00611 Aquilegia oxysepala HOM05D003346 ORTHO05D003961 4.4e-23 110.9 54 94.4
ATR0767G205 Amborella trichopoda HOM05D003346 ORTHO05D003961 1.7e-22 109.0 54 90.7
MELO3C018573.2 Cucumis melo HOM05D003346 ORTHO05D003961 1.7e-22 109.0 54 90.7
CsaV3_7G007250 Cucumis sativus L. HOM05D003346 ORTHO05D003961 1.7e-22 109.0 54 90.7
Gorai.008G042800 Gossypium raimondii HOM05D003346 ORTHO05D003961 1.7e-22 109.0 54 90.7
Thecc.08G078600 Theobroma cacao HOM05D003346 ORTHO05D003961 1.7e-22 109.0 54 90.7
CSS0032176 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 2.2e-22 108.6 58 87.9
Gohir.A12G031300 Gossypium hirsutum HOM05D003346 ORTHO05D003961 2.2e-22 108.6 54 88.9
Gohir.D12G041000 Gossypium hirsutum HOM05D003346 ORTHO05D003961 2.2e-22 108.6 54 88.9
Hund17459 Selenicereus undatus HOM05D003346 ORTHO05D003961 2.2e-22 108.6 54 90.7
Manes.07G048300 Manihot esculenta HOM05D003346 ORTHO05D003961 2.9e-22 108.2 54 88.9
Nn1g05959 Nelumbo nucifera HOM05D003346 ORTHO05D003961 2.9e-22 108.2 54 87.0
PGSC0003DMG400026784 Solanum tuberosum HOM05D003346 ORTHO05D003961 2.9e-22 108.2 54 90.7
Thecc.02G036500 Theobroma cacao HOM05D003346 ORTHO05D003961 2.9e-22 108.2 54 88.9
Cfa004788 Carpinus fangiana HOM05D003346 ORTHO05D003961 3.8e-22 107.8 54 90.7
THA.LOC104804563 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 3.8e-22 107.8 54 90.7
CSS0024201 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 4.9e-22 107.5 54 92.6
Lj9A341T43 Lonicera japonica HOM05D003346 ORTHO05D003961 4.9e-22 107.5 54 88.9
Nitab4.5_0002290g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 4.9e-22 107.5 54 90.7
Nitab4.5_0004008g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 4.9e-22 107.5 54 90.7
Peaxi162Scf00003g02931 Petunia axillaris HOM05D003346 ORTHO05D003961 4.9e-22 107.5 54 90.7
Sed0020205 Sechium edule HOM05D003346 ORTHO05D003961 4.9e-22 107.5 54 90.7
THA.LOC104818456 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 4.9e-22 107.5 54 92.6
CAN.G504.61 Capsicum annuum HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 87.0
COL.COLO4_35344 Corchorus olitorius HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 88.9
HanXRQChr05g0150331 Helianthus annuus HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 90.7
Hma1.2p1_0435F.1_g152500 Hydrangea macrophylla HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 87.0
Lsat_1_v5_gn_7_83301 Lactuca sativa HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 88.9
MBI16_g41327_MAGBIO Magnolia biondii HOM05D003346 ORTHO05D003073 6.4e-22 107.1 56 85.7
Nitab4.5_0012886g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 87.0
Sc24g0001620 Simmondsia chinensis HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 87.0
Solyc01g106430.3 Solanum lycopersicum HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 87.0
Sopen01g048800 Solanum pennellii HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 87.0
PGSC0003DMG400003103 Solanum tuberosum HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 87.0
TAR628G0837 Trochodendron aralioides HOM05D003346 ORTHO05D003961 6.4e-22 107.1 54 85.2
MSTRG.16650 Avicennia marina HOM05D003346 ORTHO05D003961 8.4e-22 106.7 54 87.0
CARHR278470 Cardamine hirsuta HOM05D003346 ORTHO05D003961 8.4e-22 106.7 54 88.9
AUR62026678 Chenopodium quinoa HOM05D003346 ORTHO05D003961 8.4e-22 106.7 54 87.0
AUR62040586 Chenopodium quinoa HOM05D003346 ORTHO05D003961 8.4e-22 106.7 54 87.0
Thhalv10004681m.g Eutrema salsugineum HOM05D003346 ORTHO05D003961 8.4e-22 106.7 54 88.9
Sabra16G0179400 Salix brachista HOM05D003346 ORTHO05D003961 8.4e-22 106.7 54 88.9
ClCG09G016330 Citrullus lanatus HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 90.7
Cc02_g20460 Coffea canephora HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 87.0
Dinv08954 Davidia involucrata HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 88.9
ECA240G2920 Erigeron canadensis HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 88.9
Gohir.D04G172500 Gossypium hirsutum HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 87.0
Gorai.012G161500 Gossypium raimondii HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 87.0
Nitab4.5_0009020g0020 Nicotiana tabacum HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 87.0
Sed0004910 Sechium edule HOM05D003346 ORTHO05D003961 1.1e-21 106.3 54 88.9
CANSAT64G0316 Cannabis sativa HOM05D003346 ORTHO05D003961 1.4e-21 105.9 54 85.2
Cpa.g.sc20.58 Carica papaya HOM05D003346 ORTHO05D003961 1.4e-21 105.9 54 87.0
Lj5C224G7 Lonicera japonica HOM05D003346 ORTHO05D003961 1.4e-21 105.9 54 88.9
Nn5g29140 Nelumbo nucifera HOM05D003346 ORTHO05D003961 1.4e-21 105.9 54 88.9
SGA_v2.0_scaffold342G49417 Striga asiatica HOM05D003346 ORTHO05D003961 1.4e-21 105.9 54 87.0
DCAR_021918 Daucus carota HOM05D003346 ORTHO05D003961 1.9e-21 105.5 54 87.0
Migut.B00508 Erythranthe guttata HOM05D003346 ORTHO05D003961 1.9e-21 105.5 54 88.9
SalBow6G1029 Salvia bowleyana HOM05D003346 ORTHO05D003961 1.9e-21 105.5 54 88.9
Solyc10g047950.2 Solanum lycopersicum HOM05D003346 ORTHO05D003961 1.9e-21 105.5 54 88.9
Sopen10g018900 Solanum pennellii HOM05D003346 ORTHO05D003961 1.9e-21 105.5 54 88.9
Atru.chr6.1393 Acer truncatum HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 88.9
Actinidia28012 Actinidia chinensis HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 88.9
EL10Ac1g01584 Beta vulgaris HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 87.0
CiPaw.05G025400 Carya illinoinensis HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 87.0
CDE07G1052 Ceratophyllum demersum HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 87.0
Duzib132G0992 Durio zibethinus HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 88.9
Oeu014212.2 Olea europaea HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 87.0
Sabra09G0062900 Salix brachista HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 81.5
THA.LOC104820153 Tarenaya hassleriana HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 88.9
HPP92_001856 Vanilla planifolia HOM05D003346 ORTHO05D003961 2.4e-21 105.1 54 87.0
CSS0048261 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 88.9
Carub.0008s2530 Capsella rubella HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 87.0
Gohir.A04G127800 Gossypium hirsutum HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 85.2
Hma1.2p1_2001F.1_g310680 Hydrangea macrophylla HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 85.2
PSO170G1170 Papaver somniferum HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 87.0
PSO210G2397 Papaver somniferum HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 87.0
PSO761G0299 Papaver somniferum HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 87.0
Potri.009G081200 Populus trichocarpa HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 83.3
PGR042G2549 Punica granatum HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 85.2
TAR376G0743 Trochodendron aralioides HOM05D003346 ORTHO05D003961 3.2e-21 104.8 54 87.0
Actinidia29267 Actinidia chinensis HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 88.9
BcaB08g37193 Brassica carinata HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 88.9
A10p27720 Brassica napus HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 88.9
C09p67820 Brassica napus HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 88.9
BraA10t44824Z Brassica rapa HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 88.9
CDE07G0051 Ceratophyllum demersum HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 85.2
ECA236G1533 Erigeron canadensis HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 88.9
Lsat_1_v5_gn_9_114300 Lactuca sativa HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 85.2
Lj1g0009168 Lotus japonicus HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 88.9
Rhsim05G0094600 Rhododendron simsii HOM05D003346 ORTHO05D003961 4.2e-21 104.4 54 87.0
arahy.Tifrunner.gnm1.ann1.RLY5XN Arachis hypogaea HOM05D003346 ORTHO05D003961 5.4e-21 104.0 54 87.0
arahy.Tifrunner.gnm1.ann1.W9Z0UK Arachis hypogaea HOM05D003346 ORTHO05D003961 5.4e-21 104.0 54 87.0
vmacro19585 Vaccinium macrocarpon HOM05D003346 ORTHO05D003961 5.4e-21 104.0 54 85.2
arahy.Tifrunner.gnm1.ann1.UW1SNI Arachis hypogaea HOM05D003346 ORTHO05D003961 7.1e-21 103.6 54 87.0
Glyma.13G253600 Glycine max HOM05D003346 ORTHO05D003961 7.1e-21 103.6 54 87.0
QL11p027476 Quercus lobata HOM05D003346 ORTHO05D003961 7.1e-21 103.6 54 87.0
Ciclev10028967m.g Citrus clementina HOM05D003346 ORTHO05D003961 9.3e-21 103.2 54 87.0
Lalb_Chr18g0060231 Lupinus albus HOM05D003346 ORTHO05D003961 9.3e-21 103.2 54 87.0
Medtr2g010430 Medicago truncatula HOM05D003346 ORTHO05D003961 9.3e-21 103.2 54 87.0
AT5G09650 Arabidopsis thaliana HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 87.0
BcaB08g37151 Brassica carinata HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 87.0
CARHR203740 Cardamine hirsuta HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 87.0
Duzib052G1149 Durio zibethinus HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 83.3
Thhalv10014221m.g Eutrema salsugineum HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 87.0
Gohir.A01G178900 Gossypium hirsutum HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 85.2
Gohir.D01G169700 Gossypium hirsutum HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 85.2
Gorai.002G211300 Gossypium raimondii HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 85.2
HanXRQChr09g0250791 Helianthus annuus HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 85.2
MD05G1051000 Malus domestica HOM05D003346 ORTHO05D003961 1.2e-20 102.8 54 85.2
BolC9t59543H Brassica oleracea HOM05D003346 ORTHO05D003961 1.6e-20 102.4 54 87.0
Cfa020697 Carpinus fangiana HOM05D003346 ORTHO05D003961 1.6e-20 102.4 54 85.2
CiPaw.06G161600 Carya illinoinensis HOM05D003346 ORTHO05D003961 1.6e-20 102.4 54 85.2
Glyma.15G061300 Glycine max HOM05D003346 ORTHO05D003961 1.6e-20 102.4 54 85.2
Potri.001G286900 Populus trichocarpa HOM05D003346 ORTHO05D003961 1.6e-20 102.4 54 83.3
unitig_747.g21248 Utricularia gibba HOM05D003346 ORTHO05D003961 1.6e-20 102.4 54 85.2
Eucgr.G01119 Eucalyptus grandis HOM05D003346 ORTHO05D003961 2.1e-20 102.1 54 83.3
Eucgr.G01121 Eucalyptus grandis HOM05D003346 ORTHO05D003961 2.1e-20 102.1 54 83.3
SEGI_02374 Sequoiadendron giganteum HOM05D003346 ORTHO05D003961 2.1e-20 102.1 55 85.5
Aa31LG3G17420 Aethionema arabicum HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
AL6G20070 Arabidopsis lyrata HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
arahy.Tifrunner.gnm1.ann1.E6NZI1 Arachis hypogaea HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
BcaB01g05568 Brassica carinata HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
BcaB01g05664 Brassica carinata HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
A03p04200 Brassica napus HOM05D002845 ORTHO05D003180 2.7e-20 101.7 54 85.2
C03p04650 Brassica napus HOM05D002845 ORTHO05D003180 2.7e-20 101.7 54 85.2
BolC3t12997H Brassica oleracea HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
BraA03t09765Z Brassica rapa HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
CSS0023948 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 87.0
PSO782G2665 Papaver somniferum HOM05D003346 ORTHO05D003961 2.7e-20 101.7 54 85.2
BcaB05g21541 Brassica carinata HOM05D003346 ORTHO05D003961 3.5e-20 101.3 54 87.0
Ca_00191_v3 Cicer arietinum L. HOM05D003346 ORTHO05D003961 3.5e-20 101.3 54 85.2
Haze_19004 Corylus avellana HOM05D003346 ORTHO05D003961 3.5e-20 101.3 54 83.3
MD17G1239600 Malus domestica HOM05D003346 ORTHO05D003961 3.5e-20 101.3 54 83.3
SGA_v2.0_scaffold32G12959 Striga asiatica HOM05D003346 ORTHO05D003961 3.5e-20 101.3 54 83.3
AagrBONN_evm.TU.Sc2ySwM_362.1690 Anthoceros agrestis HOM05D003346 ORTHO05D003961 4.6e-20 100.9 54 81.5
CSS0019845 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 4.6e-20 100.9 65 75.4
Prupe.8G077800 Prunus persica HOM05D003346 ORTHO05D003961 4.6e-20 100.9 54 83.3
TPR.G32666 Trifolium pratense HOM05D003346 ORTHO05D003961 4.6e-20 100.9 54 85.2
AagrBONN_evm.TU.Sc2ySwM_362.2321 Anthoceros agrestis HOM05D000718 ORTHO05D002712 6.0e-20 100.5 54 79.6
Carub.0003s2760 Capsella rubella HOM05D003346 ORTHO05D003961 6.0e-20 100.5 54 85.2
Dinv16043 Davidia involucrata HOM05D003346 ORTHO05D003961 6.0e-20 100.5 52 88.5
A02p00080 Brassica napus HOM05D003346 ORTHO05D003961 7.8e-20 100.1 54 85.2
BraA02t04993Z Brassica rapa HOM05D003346 ORTHO05D003961 7.8e-20 100.1 54 85.2
MD10G1058400 Malus domestica HOM05D003346 ORTHO05D003961 7.8e-20 100.1 54 83.3
Os02g0768600 Oryza sativa ssp. japonica HOM05D003346 ORTHO05D003961 7.8e-20 100.1 54 81.5
Psat1g212360 Pisum sativum HOM05D003346 ORTHO05D003961 7.8e-20 100.1 54 81.5
VMungo0540G0002 Vigna mungo HOM05D003346 ORTHO05D003961 7.8e-20 100.1 54 83.3
Pp3c5_20920 Physcomitrium patens HOM05D003346 ORTHO05D003961 1.3e-19 99.4 54 79.6
Sp6g33730 Schrenkiella parvula HOM05D003346 ORTHO05D003961 1.3e-19 99.4 54 83.3
TWI23G0433 Tripterygium wilfordii HOM05D003346 ORTHO05D003961 1.3e-19 99.4 54 83.3
TWI59G1408 Tripterygium wilfordii HOM05D003346 ORTHO05D003961 1.3e-19 99.4 54 83.3
FvH4_2g10920 Fragaria vesca HOM05D003346 ORTHO05D003961 1.7e-19 99.0 54 83.3
FAN20G2153 Fragaria x ananassa HOM05D003346 ORTHO05D003961 1.7e-19 99.0 54 83.3
FAN24G2235 Fragaria x ananassa HOM05D003346 ORTHO05D003961 1.7e-19 99.0 54 83.3
FAN27G2531 Fragaria x ananassa HOM05D003346 ORTHO05D003961 1.7e-19 99.0 54 83.3
Zm00001eb256150 Zea mays HOM05D003346 ORTHO05D003961 1.7e-19 99.0 54 79.6
CSS0013432 Camellia sinensis var. sinensis HOM05D003346 ORTHO05D003961 2.3e-19 98.6 54 83.3
Phvul.006G198500 Phaseolus vulgaris HOM05D003346 ORTHO05D003961 2.3e-19 98.6 54 81.5
SHI04911 Sapria himalayana HOM05D003346 ORTHO05D003961 2.3e-19 98.6 58 74.1
Pp3c6_10750 Physcomitrium patens HOM05D003346 ORTHO05D003961 3.0e-19 98.2 54 79.6
Lj6g0028202 Lotus japonicus HOM05D003346 ORTHO05D003961 3.9e-19 97.8 54 81.5
Mapoly0008s0217 Marchantia polymorpha HOM05D003346 ORTHO05D003961 3.9e-19 97.8 54 81.5
RcHm_v2.0_Chr6g0269081 Rosa chinensis HOM05D003346 ORTHO05D003961 8.7e-19 96.7 54 81.5
FAN15G0783 Fragaria x ananassa HOM05D003346 ORTHO05D003961 1.9e-18 95.5 54 79.6
CBR_g20327 Chara braunii HOM05D003346 ORTHO05D003961 5.6e-18 94.0 54 77.8
AagrBONN_evm.TU.Sc2ySwM_362.2322 Anthoceros agrestis HOM05D003346 ORTHO05D003961 1.1e-16 89.7 55 69.1
MCO16G586 Micromonas commoda HOM05D003346 ORTHO05D003961 1.4e-16 89.4 54 75.9
Cre10.g424100 Chlamydomonas reinhardtii HOM05D003346 ORTHO05D003961 4.5e-15 84.3 54 72.2
SMO367G1075 Selaginella moellendorffii HOM05D003346 ORTHO05D003961 5.8e-15 84.0 57 70.2
MD09G1246600 Malus domestica HOM05D003346 ORTHO05D003961 2.2e-14 82.0 45 80.0
Cc02_g20450 Coffea canephora HOM05D003346 ORTHO05D003961 7.1e-13 77.0 51 58.8
GSVIVG01009250001 Vitis vinifera HOM05D003346 ORTHO05D003961 7.1e-13 77.0 47 74.5
Peaxi162Scf00299g00235 Petunia axillaris HOM05D003346 ORTHO05D003961 1.6e-12 75.9 42 81.0
BcaC03g13267 Brassica carinata HOM05D003346 ORTHO05D003961 6.0e-12 73.9 54 68.5
PRCOL_00000780 Prasinoderma coloniale HOM05D004343 ORTHO05D005695 6.0e-12 73.9 57 64.9
Pp3c25_5130 Physcomitrium patens HOM05D003346 ORTHO05D003961 8.7e-11 70.1 55 56.4
Haze_27371 Corylus avellana HOM05D003346 ORTHO05D003961 9.6e-10 66.6 55 58.2
C02p03980 Brassica napus HOM05D003346 ORTHO05D003961 1.3e-09 66.2 37 81.1
BolC2t06360H Brassica oleracea HOM05D003346 ORTHO05D003961 1.3e-09 66.2 37 81.1
AL8G41880 Arabidopsis lyrata HOM05D003346 ORTHO05D003961 1.6e-09 65.9 32 87.5
Cfa021698 Carpinus fangiana HOM05D003346 ORTHO05D003961 4.0e-08 61.2 54 53.7


User provided reference genes

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