Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043791 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 6.9e-121 437.6 264 100.0
CSS0016947 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 4.0e-100 368.6 273 83.2
CSS0026322 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 3.5e-96 355.5 270 78.9
CSS0001357 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 2.3e-79 299.7 203 88.2
Haze_14295 Corylus avellana HOM05D003288 ORTHO05D003734 5.6e-70 268.5 273 54.2
MD09G1266100 Malus domestica HOM05D003288 ORTHO05D003734 1.8e-68 263.5 273 54.2
Rhsim10G0182400 Rhododendron simsii HOM05D003288 ORTHO05D003734 5.2e-68 261.9 273 63.0
Actinidia17186 Actinidia chinensis HOM05D003288 ORTHO05D003734 6.8e-68 261.5 270 61.1
Nn5g28678 Nelumbo nucifera HOM05D003288 ORTHO05D003734 1.2e-67 260.8 273 52.0
SalBow4G2398 Salvia bowleyana HOM05D003288 ORTHO05D003734 1.5e-67 260.4 273 53.5
vmacro23304 Vaccinium macrocarpon HOM05D003288 ORTHO05D003734 1.9e-65 253.4 273 57.9
GSVIVG01030016001 Vitis vinifera HOM05D003288 ORTHO05D003734 7.0e-65 251.5 272 52.6
CDE06G2565 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 2.3e-63 246.5 273 48.4
COL.COLO4_06958 Corchorus olitorius HOM05D003288 ORTHO05D003734 7.3e-62 241.5 273 47.6
Dinv28220 Davidia involucrata HOM05D003288 ORTHO05D003734 1.6e-61 240.4 266 54.1
DCAR_030537 Daucus carota HOM05D003288 ORTHO05D003734 2.1e-61 240.0 272 48.9
ECA238G4239 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.1e-60 237.7 269 49.1
Oeu009426.1 Olea europaea HOM05D003288 ORTHO05D003734 1.4e-60 237.3 274 49.3
QL01p032763 Quercus lobata HOM05D003288 ORTHO05D003734 1.8e-60 236.9 273 53.8
Lj2g0015416 Lotus japonicus HOM05D003288 ORTHO05D003734 2.3e-60 236.5 273 49.1
TAR629G0745 Trochodendron aralioides HOM05D003288 ORTHO05D003734 5.2e-60 235.3 272 51.8
Duzib268G1591 Durio zibethinus HOM05D003288 ORTHO05D003734 1.2e-59 234.2 273 47.3
TAR623G0700 Trochodendron aralioides HOM05D003288 ORTHO05D003734 1.5e-59 233.8 272 47.4
TWI74G0189 Tripterygium wilfordii HOM05D003288 ORTHO05D003734 2.0e-59 233.4 272 48.2
Ciclev10011340m.g Citrus clementina HOM05D003288 ORTHO05D003734 2.6e-59 233.0 273 47.6
Lalb_Chr05g0212271 Lupinus albus HOM05D003288 ORTHO05D003734 2.6e-59 233.0 287 47.4
SGA_v2.0_scaffold96G29122 Striga asiatica HOM05D003288 ORTHO05D003734 4.4e-59 232.3 274 48.9
Thecc.04G002400 Theobroma cacao HOM05D003288 ORTHO05D003734 9.8e-59 231.1 273 46.9
Lj7A364T81 Lonicera japonica HOM05D003288 ORTHO05D003734 1.3e-58 230.7 273 49.8
PGR083G1244 Punica granatum HOM05D003288 ORTHO05D003734 2.2e-58 229.9 273 47.6
Lsat_1_v5_gn_4_26961 Lactuca sativa HOM05D003288 ORTHO05D003734 2.9e-58 229.6 273 48.0
QL02p059844 Quercus lobata HOM05D003288 ORTHO05D003734 3.7e-58 229.2 273 53.5
TPR.G8950 Trifolium pratense HOM05D003288 ORTHO05D003734 6.4e-58 228.4 282 48.2
FvH4_6g33230 Fragaria vesca HOM05D003288 ORTHO05D003734 1.1e-57 227.6 273 51.6
Rhsim12G0111000 Rhododendron simsii HOM05D003288 ORTHO05D003734 1.1e-57 227.6 273 50.9
PGSC0003DMG400000983 Solanum tuberosum HOM05D003288 ORTHO05D003734 1.4e-57 227.3 272 48.2
Sed0014607 Sechium edule HOM05D003288 ORTHO05D003734 2.4e-57 226.5 273 47.3
Cc02_g09200 Coffea canephora HOM05D003288 ORTHO05D003734 3.2e-57 226.1 271 50.2
QL01p003767 Quercus lobata HOM05D003288 ORTHO05D003734 3.2e-57 226.1 273 56.4
Solyc11g006310.2 Solanum lycopersicum HOM05D003288 ORTHO05D003734 1.2e-56 224.2 272 47.4
Nn4g23260 Nelumbo nucifera HOM05D003288 ORTHO05D003734 3.5e-56 222.6 272 46.7
Cpa.g.sc116.89 Carica papaya HOM05D003288 ORTHO05D003734 1.3e-55 220.7 273 44.0
ClCG10G010670 Citrullus lanatus HOM05D003288 ORTHO05D003734 3.9e-55 219.2 271 46.9
Ca_03338_v3 Cicer arietinum L. HOM05D003288 ORTHO05D003734 8.6e-55 218.0 272 47.1
arahy.Tifrunner.gnm1.ann1.F6RFY9 Arachis hypogaea HOM05D003288 ORTHO05D003734 1.1e-54 217.6 273 46.9
arahy.Tifrunner.gnm1.ann1.G6QY2G Arachis hypogaea HOM05D003288 ORTHO05D003734 1.1e-54 217.6 273 46.9
Cfa007776 Carpinus fangiana HOM05D003288 ORTHO05D003734 1.1e-54 217.6 273 46.5
Manes.02G079400 Manihot esculenta HOM05D003288 ORTHO05D003734 5.6e-54 215.3 273 43.6
CDE07G0160 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 1.6e-53 213.8 273 45.4
Phvul.001G228800 Phaseolus vulgaris HOM05D003288 ORTHO05D003734 1.6e-53 213.8 263 47.1
CsaV3_4G000640 Cucumis sativus L. HOM05D003288 ORTHO05D003734 2.8e-53 213.0 273 45.4
ECA240G3548 Erigeron canadensis HOM05D003288 ORTHO05D003734 3.6e-53 212.6 270 46.3
Aqoxy2G03361 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 6.2e-53 211.8 269 44.2
EL10As8g23882 Beta vulgaris HOM05D003288 ORTHO05D003734 1.1e-52 211.1 270 51.5
CAN.G1256.15 Capsicum annuum HOM05D003288 ORTHO05D003734 1.1e-52 211.1 273 44.0
FAN14G0969 Fragaria x ananassa HOM05D003288 ORTHO05D003734 1.1e-52 211.1 306 46.1
Lalb_Chr15g0085041 Lupinus albus HOM05D003288 ORTHO05D003734 1.1e-52 211.1 273 45.1
DCAR_014148 Daucus carota HOM05D003288 ORTHO05D003734 1.8e-52 210.3 278 43.9
VMungo1383G3441 Vigna mungo HOM05D003288 ORTHO05D003734 1.8e-52 210.3 271 45.8
AUR62017809 Chenopodium quinoa HOM05D003288 ORTHO05D003734 5.2e-52 208.8 270 44.8
Lsat_1_v5_gn_3_104940 Lactuca sativa HOM05D003288 ORTHO05D003734 5.2e-52 208.8 269 45.7
Aqoxy3G02762 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 6.8e-52 208.4 273 43.2
AUR62035243 Chenopodium quinoa HOM05D003288 ORTHO05D003734 8.9e-52 208.0 270 45.2
FAN09G4788 Fragaria x ananassa HOM05D003288 ORTHO05D003734 1.5e-51 207.2 306 49.0
Medtr2g093230 Medicago truncatula HOM05D003288 ORTHO05D003734 1.5e-51 207.2 272 46.0
PSO210G4855 Papaver somniferum HOM05D003288 ORTHO05D003734 1.5e-51 207.2 265 44.5
TAR629G1838 Trochodendron aralioides HOM05D003288 ORTHO05D003734 2.0e-51 206.8 272 44.5
AUR62004111 Chenopodium quinoa HOM05D003288 ORTHO05D003734 3.4e-51 206.1 270 44.8
Lj2C515T4 Lonicera japonica HOM05D003288 ORTHO05D003734 4.4e-51 205.7 271 48.0
AUR62023637 Chenopodium quinoa HOM05D003288 ORTHO05D003734 7.6e-51 204.9 270 44.4
FAN05G3577 Fragaria x ananassa HOM05D003288 ORTHO05D003734 3.7e-50 202.6 306 48.4
AUR62007625 Chenopodium quinoa HOM05D003288 ORTHO05D003734 8.4e-50 201.4 270 44.1
arahy.Tifrunner.gnm1.ann1.NZ46DJ Arachis hypogaea HOM05D003288 ORTHO05D003734 2.4e-49 199.9 273 43.6
Medtr2g063920 Medicago truncatula HOM05D003288 ORTHO05D003734 2.4e-49 199.9 272 51.5
arahy.Tifrunner.gnm1.ann1.BXR7J4 Arachis hypogaea HOM05D003288 ORTHO05D003734 3.2e-49 199.5 273 43.6
FAN02G3499 Fragaria x ananassa HOM05D003288 ORTHO05D003734 3.2e-49 199.5 306 50.0
MELO3C017972.2 Cucumis melo HOM05D003288 ORTHO05D003734 5.4e-49 198.7 270 43.7
Lj5g0021383 Lotus japonicus HOM05D003288 ORTHO05D003734 1.2e-48 197.6 272 49.3
SHI30119 Sapria himalayana HOM05D003288 ORTHO05D003734 1.6e-48 197.2 273 44.3
Migut.A00479 Erythranthe guttata HOM05D003288 ORTHO05D003734 2.7e-48 196.4 273 44.0
AL8G31020 Arabidopsis lyrata HOM05D003288 ORTHO05D003734 3.0e-47 193.0 269 41.3
Sabra17G0114500 Salix brachista HOM05D003288 ORTHO05D003734 3.9e-47 192.6 273 50.2
RcHm_v2.0_Chr2g0142951 Rosa chinensis HOM05D003288 ORTHO05D003734 5.1e-47 192.2 273 54.2
CANSAT64G0297 Cannabis sativa HOM05D003288 ORTHO05D003734 6.6e-47 191.8 273 42.1
Sabra17G0111800 Salix brachista HOM05D003288 ORTHO05D003734 6.6e-47 191.8 273 49.8
Sabra17G0111500 Salix brachista HOM05D003288 ORTHO05D003734 1.5e-46 190.7 273 49.5
AT5G55490 Arabidopsis thaliana HOM05D003288 ORTHO05D003734 1.9e-46 190.3 273 39.2
Gohir.A12G143700 Gossypium hirsutum HOM05D003288 ORTHO05D003734 9.6e-46 188.0 273 40.7
Nitab4.5_0002640g0060 Nicotiana tabacum HOM05D003288 ORTHO05D003734 1.2e-45 187.6 273 42.9
Glyma.11G214200 Glycine max HOM05D003288 ORTHO05D003734 2.1e-45 186.8 273 49.1
Prupe.3G163900 Prunus persica HOM05D003288 ORTHO05D003734 4.7e-45 185.7 273 53.5
Sc18g0007110 Simmondsia chinensis HOM05D003288 ORTHO05D003734 8.1e-45 184.9 270 40.4
MBI13_g04499_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 2.4e-44 183.3 273 41.4
MBI13_g04500_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 3.1e-44 183.0 273 41.0
unitig_748.g8456 Utricularia gibba HOM05D003288 ORTHO05D003734 8.9e-44 181.4 272 40.1
Thhalv10015474m.g Eutrema salsugineum HOM05D003288 ORTHO05D003734 1.3e-42 177.6 273 37.0
ECA240G0593 Erigeron canadensis HOM05D003288 ORTHO05D003734 8.4e-42 174.9 269 45.0
Prupe.3G204300 Prunus persica HOM05D003288 ORTHO05D003734 8.4e-42 174.9 274 40.5
SGA_v2.0_scaffold79G25577 Striga asiatica HOM05D003288 ORTHO05D003734 2.4e-41 173.3 186 53.2
FvH4_6g41730 Fragaria vesca HOM05D003288 ORTHO05D003734 4.2e-41 172.6 261 47.5
Glyma.05G018700 Glycine max HOM05D003288 ORTHO05D003734 1.0e-39 167.9 273 46.2
Gohir.D12G148400 Gossypium hirsutum HOM05D003288 ORTHO05D003734 1.0e-39 167.9 273 40.7
Ah.02g124870 Amaranthus hybridus HOM05D003288 ORTHO05D003734 1.7e-39 167.2 222 43.7
Potri.017G137100 Populus trichocarpa HOM05D003288 ORTHO05D003734 3.0e-39 166.4 273 46.2
MD17G1110600 Malus domestica HOM05D003288 ORTHO05D003734 5.1e-39 165.6 274 39.4
ATR0598G225 Amborella trichopoda HOM05D003288 ORTHO05D003734 1.5e-38 164.1 336 34.5
Hund06475 Selenicereus undatus HOM05D003288 ORTHO05D003734 5.6e-38 162.2 180 46.7
Ah.03g141820 Amaranthus hybridus HOM05D003288 ORTHO05D003734 7.3e-38 161.8 264 49.6
Thecc.04G002200 Theobroma cacao HOM05D003288 ORTHO05D003734 7.3e-38 161.8 273 38.8
Glyma.17G080975 Glycine max HOM05D003288 ORTHO05D003734 1.6e-37 160.6 230 42.2
QL09p034880 Quercus lobata HOM05D003288 ORTHO05D003734 1.6e-37 160.6 269 39.0
Carub.0008s1584 Capsella rubella HOM05D003288 ORTHO05D003734 2.8e-37 159.8 180 47.8
Peaxi162Scf00039g01122 Petunia axillaris HOM05D003288 ORTHO05D003734 2.8e-37 159.8 269 39.0
Duzib138G1645 Durio zibethinus HOM05D003288 ORTHO05D003734 6.2e-37 158.7 274 46.0
HanXRQChr03g0092531 Helianthus annuus HOM05D003288 ORTHO05D003734 2.4e-36 156.8 269 38.3
Haze_12714 Corylus avellana HOM05D003288 ORTHO05D003734 4.0e-36 156.0 268 39.9
HanXRQChr13g0424601 Helianthus annuus HOM05D003288 ORTHO05D003734 1.2e-35 154.5 269 46.5
ECA234G0526 Erigeron canadensis HOM05D003288 ORTHO05D003734 2.0e-35 153.7 180 49.4
SEGI_20345 Sequoiadendron giganteum HOM05D003288 ORTHO05D003734 2.6e-35 153.3 270 35.6
Glyma.18G042400 Glycine max HOM05D003288 ORTHO05D003734 7.6e-35 151.8 184 47.8
PSO210G3953 Papaver somniferum HOM05D003288 ORTHO05D003734 7.6e-35 151.8 269 48.7
Eucgr.F02892 Eucalyptus grandis HOM05D003288 ORTHO05D003734 3.8e-34 149.4 273 49.1
Os09g0442400 Oryza sativa ssp. japonica HOM05D003288 ORTHO05D003734 1.9e-33 147.1 272 33.1
THA.LOC104805978 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 5.4e-33 145.6 273 46.2
BraA10t43361Z Brassica rapa HOM05D003288 ORTHO05D003734 9.3e-33 144.8 269 32.0
Zm00001eb314230 Zea mays HOM05D003288 ORTHO05D003734 9.3e-33 144.8 272 33.8
PSO447G0361 Papaver somniferum HOM05D003288 ORTHO05D003734 2.1e-32 143.7 180 45.0
AUR62003503 Chenopodium quinoa HOM05D003288 ORTHO05D003734 2.7e-32 143.3 253 39.1
Rhsim10G0181900 Rhododendron simsii HOM05D003288 ORTHO05D003734 6.0e-32 142.1 184 47.3
TPR.G37900 Trifolium pratense HOM05D003288 ORTHO05D003734 6.0e-32 142.1 202 43.1
Lsat_1_v5_gn_3_125960 Lactuca sativa HOM05D003288 ORTHO05D003734 7.9e-32 141.7 109 66.1
VMungo0331G0214 Vigna mungo HOM05D003288 ORTHO05D003734 7.9e-32 141.7 255 39.2
CARHR268800 Cardamine hirsuta HOM05D003288 ORTHO05D003734 1.3e-31 141.0 273 44.7
Medtr2g063863 Medicago truncatula HOM05D003288 ORTHO05D003734 3.9e-31 139.4 272 46.7
Psat0s1991g0080 Pisum sativum HOM05D003288 ORTHO05D003734 6.6e-31 138.7 272 46.7
Medtr6g091980 Medicago truncatula HOM05D003288 ORTHO05D003734 8.7e-31 138.3 116 59.5
Medtr2g063823 Medicago truncatula HOM05D003288 ORTHO05D003734 1.5e-30 137.5 116 59.5
PSO210G3300 Papaver somniferum HOM05D003288 ORTHO05D003734 1.3e-29 134.4 113 59.3
Psat1g016080 Pisum sativum HOM05D003288 ORTHO05D003734 1.1e-28 131.3 116 56.0
HPP92_013124 Vanilla planifolia HOM05D003288 ORTHO05D003734 1.8e-28 130.6 272 44.5
FAN14G3219 Fragaria x ananassa HOM05D003288 ORTHO05D003734 2.4e-28 130.2 333 30.6
Atru.chr6.3343 Acer truncatum HOM05D003288 ORTHO05D003734 6.9e-28 128.6 139 47.5
HanXRQChr03g0092541 Helianthus annuus HOM05D003288 ORTHO05D003734 6.9e-28 128.6 271 32.8
CsaV3_3G017990 Cucumis sativus L. HOM05D003288 ORTHO05D003734 2.0e-27 127.1 165 46.7
C03p16470 Brassica napus HOM05D003288 ORTHO05D003734 1.3e-26 124.4 272 30.5
BolC3t14067H Brassica oleracea HOM05D003288 ORTHO05D003734 1.3e-26 124.4 272 30.5
EL10Ac6g15379 Beta vulgaris HOM05D003288 ORTHO05D003734 2.9e-26 123.2 253 34.4
THA.LOC109115998 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 3.8e-26 122.9 273 44.0
BraA03t10702Z Brassica rapa HOM05D003288 ORTHO05D003734 6.4e-26 122.1 272 29.8
Aa31LG2G2840 Aethionema arabicum HOM05D003288 ORTHO05D003734 1.1e-25 121.3 271 41.3
A03p14030 Brassica napus HOM05D003288 ORTHO05D003734 1.9e-25 120.6 272 29.0
Atru.chr7.1988 Acer truncatum HOM05D003288 ORTHO05D003734 4.2e-25 119.4 140 45.0
Peaxi162Scf00120g00813 Petunia axillaris HOM05D003288 ORTHO05D003734 7.1e-25 118.6 273 31.9
EL10Ac6g15375 Beta vulgaris HOM05D003288 ORTHO05D003734 2.1e-24 117.1 253 34.0
Os07g0668100 Oryza sativa ssp. japonica HOM05D003288 ORTHO05D003734 2.1e-24 117.1 274 33.2
QL08p029080 Quercus lobata HOM05D003288 ORTHO05D003734 2.1e-24 117.1 170 44.1
FAN02G4572 Fragaria x ananassa HOM05D003288 ORTHO05D003734 4.6e-24 115.9 268 43.3
FAN09G2221 Fragaria x ananassa HOM05D003288 ORTHO05D003734 1.5e-22 110.9 164 39.6
CSS0049339 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 1.3e-21 107.8 65 87.7
RcHm_v2.0_Chr2g0157531 Rosa chinensis HOM05D003288 ORTHO05D003734 1.3e-21 107.8 180 38.9
Sopen11g002220 Solanum pennellii HOM05D003288 ORTHO05D003734 3.7e-21 106.3 149 44.3
A10p16000 Brassica napus HOM05D003288 ORTHO05D003734 9.0e-20 101.7 128 43.8
Nitab4.5_0001781g0030 Nicotiana tabacum HOM05D003288 ORTHO05D003734 5.8e-19 99.0 271 29.5
DCAR_004634 Daucus carota HOM05D003288 ORTHO05D003734 7.6e-19 98.6 272 28.3
Oeu048956.1 Olea europaea HOM05D003288 ORTHO05D003734 1.0e-18 98.2 125 47.2
Pp3c8_19560 Physcomitrium patens HOM05D003288 ORTHO05D003734 2.5e-17 93.6 193 30.1
Gorai.008G159700 Gossypium raimondii HOM05D003288 ORTHO05D003734 3.2e-17 93.2 142 38.0
RcHm_v2.0_Chr2g0139401 Rosa chinensis HOM05D003288 ORTHO05D003734 5.5e-17 92.4 167 55.7
Medtr4g009310 Medicago truncatula HOM05D003288 ORTHO05D003734 7.1e-17 92.0 88 53.4
Mapoly0046s0117 Marchantia polymorpha HOM05D003288 ORTHO05D003734 9.3e-17 91.7 275 25.8
A10p12610 Brassica napus HOM05D003288 ORTHO05D003734 1.2e-16 91.3 102 45.1
Sp6g17370 Schrenkiella parvula HOM05D003288 ORTHO05D003734 2.7e-16 90.1 101 44.6
BcaB08g35905 Brassica carinata HOM05D003288 ORTHO05D003734 7.9e-16 88.6 100 45.0
BcaNung05847 Brassica carinata HOM05D003288 ORTHO05D003734 7.9e-16 88.6 100 45.0
C09p46140 Brassica napus HOM05D003288 ORTHO05D003734 7.9e-16 88.6 100 45.0
BolC9t57480H Brassica oleracea HOM05D003288 ORTHO05D003734 7.9e-16 88.6 100 45.0
ClCG05G010520 Citrullus lanatus HOM05D003288 ORTHO05D003734 1.1e-14 84.7 87 52.9
BcaC01g06370 Brassica carinata HOM05D003288 ORTHO05D003734 1.9e-14 84.0 260 26.9
Dinv19061 Davidia involucrata HOM05D003288 ORTHO05D003734 9.6e-14 81.6 64 60.9
HanXRQChr09g0261651 Helianthus annuus HOM05D003288 ORTHO05D003734 1.8e-12 77.4 143 46.9
ECA240G2483 Erigeron canadensis HOM05D003288 ORTHO05D003734 2.4e-12 77.0 119 39.5
CBR_g12548 Chara braunii HOM05D003288 ORTHO05D003734 5.3e-12 75.9 124 34.7
VMungo0331G0333 Vigna mungo HOM05D003288 ORTHO05D003734 1.2e-11 74.7 61 60.7
VMungo0331G0952 Vigna mungo HOM05D003288 ORTHO05D003734 7.6e-11 72.0 64 59.4
Sabra10G0020700 Salix brachista HOM05D003288 ORTHO05D003734 3.2e-09 66.6 49 69.4
Hma1.2p1_1386F.1_g279840 Hydrangea macrophylla HOM05D003288 ORTHO05D003734 1.2e-08 64.7 56 55.4
CDE04G3315 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 1.1e-06 58.2 41 68.3


User provided reference genes

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