Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043770 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 3.2e-75 285.0 148 100.0
CSS0000683 Camellia sinensis var. sinensis HOM05D007089 ORTHO05D008959 8.0e-50 200.7 162 67.9
Rhsim07G0236000 Rhododendron simsii HOM05D007089 ORTHO05D008959 5.2e-41 171.4 163 57.7
vmacro04507 Vaccinium macrocarpon HOM05D007089 ORTHO05D008959 1.6e-37 159.8 176 52.8
Lj4A43T59 Lonicera japonica HOM05D007089 ORTHO05D008959 4.0e-33 145.2 159 48.4
Hma1.2p1_0203F.1_g086680 Hydrangea macrophylla HOM05D007089 ORTHO05D008959 7.5e-32 141.0 156 51.3
QL02p007525 Quercus lobata HOM05D007089 ORTHO05D008959 9.8e-32 140.6 158 51.9
Prupe.1G383100 Prunus persica HOM05D007089 ORTHO05D008959 2.2e-31 139.4 160 50.6
Cfa018438 Carpinus fangiana HOM05D007089 ORTHO05D008959 1.1e-30 137.1 153 51.6
Thecc.01G286100 Theobroma cacao HOM05D007089 ORTHO05D008959 1.9e-30 136.3 159 51.6
Haze_17627 Corylus avellana HOM05D007089 ORTHO05D008959 7.0e-30 134.4 153 51.0
Gohir.D06G009100 Gossypium hirsutum HOM05D007089 ORTHO05D008959 3.5e-29 132.1 159 50.3
Gorai.010G011900 Gossypium raimondii HOM05D007089 ORTHO05D008959 3.5e-29 132.1 159 50.3
Duzib041G0709 Durio zibethinus HOM05D007089 ORTHO05D008959 6.0e-29 131.3 160 49.4
Gohir.A06G011700 Gossypium hirsutum HOM05D007089 ORTHO05D008959 7.8e-29 131.0 159 50.3
Nitab4.5_0000110g0230 Nicotiana tabacum HOM05D007089 ORTHO05D008959 1.3e-28 130.2 155 47.1
FAN20G0063 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.7e-28 129.8 160 45.6
Oeu015592.2 Olea europaea HOM05D007089 ORTHO05D008959 3.9e-28 128.6 162 46.3
Manes.05G163100 Manihot esculenta HOM05D007089 ORTHO05D008959 6.6e-28 127.9 163 47.9
FAN27G0845 Fragaria x ananassa HOM05D007089 ORTHO05D008959 1.1e-27 127.1 174 44.3
SGA_v2.0_scaffold33G13513 Striga asiatica HOM05D007089 ORTHO05D008959 1.1e-27 127.1 162 45.7
Atru.chr13.537 Acer truncatum HOM05D007089 ORTHO05D008959 3.3e-27 125.6 163 46.0
MSTRG.22295 Avicennia marina HOM05D007089 ORTHO05D008959 3.3e-27 125.6 162 46.3
Nitab4.5_0005314g0050 Nicotiana tabacum HOM05D007089 ORTHO05D008959 3.3e-27 125.6 155 45.8
FvH4_2g40230 Fragaria vesca HOM05D007089 ORTHO05D008959 4.3e-27 125.2 162 43.8
CiPaw.09G208600 Carya illinoinensis HOM05D007089 ORTHO05D008959 7.3e-27 124.4 162 46.3
Ciclev10001360m.g Citrus clementina HOM05D007089 ORTHO05D008959 7.3e-27 124.4 159 49.7
FAN15G3100 Fragaria x ananassa HOM05D007089 ORTHO05D008959 7.3e-27 124.4 162 44.4
Sabra14G0030300 Salix brachista HOM05D007089 ORTHO05D008959 9.5e-27 124.0 155 49.0
MD04G1062700 Malus domestica HOM05D007089 ORTHO05D008959 1.6e-26 123.2 160 46.9
CANSAT25G1057 Cannabis sativa HOM05D007089 ORTHO05D008959 2.1e-26 122.9 160 46.2
COL.COLO4_26368 Corchorus olitorius HOM05D007089 ORTHO05D008959 2.8e-26 122.5 159 45.9
Sopen04g033530 Solanum pennellii HOM05D007089 ORTHO05D008959 8.0e-26 120.9 153 45.1
CAN.G1126.18 Capsicum annuum HOM05D007089 ORTHO05D008959 1.1e-25 120.6 157 45.2
Solyc04g079950.4 Solanum lycopersicum HOM05D007089 ORTHO05D008959 1.4e-25 120.2 153 45.1
Potri.014G041400 Populus trichocarpa HOM05D007089 ORTHO05D008959 1.8e-25 119.8 155 47.7
SalBow8G1187 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.8e-25 119.8 161 45.3
SalBow8G1554 Salvia bowleyana HOM05D007089 ORTHO05D008959 1.8e-25 119.8 161 45.3
PGR083G0581 Punica granatum HOM05D007089 ORTHO05D008959 2.3e-25 119.4 164 44.5
RcHm_v2.0_Chr6g0300531 Rosa chinensis HOM05D007089 ORTHO05D008959 2.3e-25 119.4 160 45.0
DCAR_008774 Daucus carota HOM05D007089 ORTHO05D008959 3.1e-25 119.0 150 44.7
PGSC0003DMG400027847 Solanum tuberosum HOM05D007089 ORTHO05D008959 8.9e-25 117.5 153 45.1
Cc10_g03320 Coffea canephora HOM05D007089 ORTHO05D008959 2.0e-24 116.3 164 43.9
Migut.N00515 Erythranthe guttata HOM05D007089 ORTHO05D008959 1.3e-23 113.6 162 45.1
PSO832G2704 Papaver somniferum HOM05D007089 ORTHO05D008959 2.2e-23 112.8 165 45.5
PSO700G0257 Papaver somniferum HOM05D007089 ORTHO05D008959 2.9e-23 112.5 165 46.1
PSO170G0803 Papaver somniferum HOM05D007089 ORTHO05D008959 3.7e-23 112.1 165 45.5
MELO3C010924.2 Cucumis melo HOM05D007089 ORTHO05D008959 6.4e-23 111.3 151 45.0
Aqoxy5G01701 Aquilegia oxysepala HOM05D007089 ORTHO05D008959 1.1e-22 110.5 163 42.9
ClCG08G015310 Citrullus lanatus HOM05D007089 ORTHO05D008959 3.2e-22 109.0 151 43.0
CsaV3_2G028500 Cucumis sativus L. HOM05D007089 ORTHO05D008959 4.1e-22 108.6 151 44.4
CDE02G1565 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 1.2e-21 107.1 162 44.4
Sc02g0006440 Simmondsia chinensis HOM05D007089 ORTHO05D008959 1.2e-21 107.1 165 38.8
GSVIVG01009652001 Vitis vinifera HOM05D007089 ORTHO05D008959 2.7e-21 105.9 160 42.5
Nn1g05102 Nelumbo nucifera HOM05D007089 ORTHO05D008959 1.3e-20 103.6 160 40.0
Eucgr.F01540 Eucalyptus grandis HOM05D007089 ORTHO05D008959 1.7e-20 103.2 151 40.4
Actinidia29839 Actinidia chinensis HOM05D007089 ORTHO05D008959 2.3e-20 102.8 132 44.7
MBI16_g26378_MAGBIO Magnolia biondii HOM05D007089 ORTHO05D008959 2.3e-20 102.8 163 39.9
HanXRQChr14g0437051 Helianthus annuus HOM05D007089 ORTHO05D008959 5.1e-20 101.7 169 40.2
EL10Ac7g18245 Beta vulgaris HOM05D007089 ORTHO05D008959 3.3e-19 99.0 175 37.7
Lalb_Chr14g0369091 Lupinus albus HOM05D007089 ORTHO05D008959 5.6e-19 98.2 158 41.8
TPR.G15730 Trifolium pratense HOM05D007089 ORTHO05D008959 3.6e-18 95.5 132 43.2
Peaxi162Scf00057g00723 Petunia axillaris HOM05D007089 ORTHO05D008959 4.7e-18 95.1 143 43.4
Glyma.14G077000 Glycine max HOM05D007089 ORTHO05D008959 6.2e-18 94.7 130 43.8
Medtr1g021985 Medicago truncatula HOM05D007089 ORTHO05D008959 6.2e-18 94.7 123 43.9
Aa31LG7G4040 Aethionema arabicum HOM05D007089 ORTHO05D008959 1.1e-17 94.0 162 38.9
arahy.Tifrunner.gnm1.ann1.4B2PQ4 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.1e-17 94.0 126 45.2
arahy.Tifrunner.gnm1.ann1.K9WZZ6 Arachis hypogaea HOM05D007089 ORTHO05D008959 1.1e-17 94.0 126 45.2
HPP92_020401 Vanilla planifolia HOM05D007089 ORTHO05D008959 2.3e-17 92.8 155 38.1
Ca_13340_v3 Cicer arietinum L. HOM05D007089 ORTHO05D008959 3.1e-17 92.4 165 38.8
AL1G31930 Arabidopsis lyrata HOM05D007089 ORTHO05D008959 4.0e-17 92.0 162 38.3
Psat6g006920 Pisum sativum HOM05D007089 ORTHO05D008959 1.2e-16 90.5 148 39.9
BcaB07g31960 Brassica carinata HOM05D007089 ORTHO05D008959 2.0e-16 89.7 165 38.2
C05p17740 Brassica napus HOM05D007089 ORTHO05D008959 2.6e-16 89.4 161 37.3
Carub.0001s1893 Capsella rubella HOM05D007089 ORTHO05D008959 3.4e-16 89.0 160 35.6
Sp1g17250 Schrenkiella parvula HOM05D007089 ORTHO05D008959 3.4e-16 89.0 162 37.0
THA.LOC104809053 Tarenaya hassleriana HOM05D007089 ORTHO05D008959 3.4e-16 89.0 162 38.9
Ah.08g217460 Amaranthus hybridus HOM05D007089 ORTHO05D008959 4.4e-16 88.6 171 35.7
Lj5g0009638 Lotus japonicus HOM05D007089 ORTHO05D008959 4.4e-16 88.6 129 42.6
AUR62025603 Chenopodium quinoa HOM05D007089 ORTHO05D008959 5.8e-16 88.2 184 34.2
TAR381G0661 Trochodendron aralioides HOM05D007089 ORTHO05D008959 5.8e-16 88.2 163 36.2
BolC5t30479H Brassica oleracea HOM05D007089 ORTHO05D008959 9.9e-16 87.4 155 38.7
ATR0733G253 Amborella trichopoda HOM05D007089 ORTHO05D008959 1.3e-15 87.0 159 34.0
AT1G19340 Arabidopsis thaliana HOM05D007089 ORTHO05D008959 1.7e-15 86.7 156 35.9
A06p15500 Brassica napus HOM05D007089 ORTHO05D008959 3.7e-15 85.5 156 37.8
BraA06t24662Z Brassica rapa HOM05D007089 ORTHO05D008959 3.7e-15 85.5 156 37.8
Thhalv10007768m.g Eutrema salsugineum HOM05D007089 ORTHO05D008959 4.9e-15 85.1 156 36.5
AUR62001387 Chenopodium quinoa HOM05D007089 ORTHO05D008959 1.1e-14 84.0 132 43.2
Thecc.08G022600 Theobroma cacao HOM05D007089 ORTHO05D008959 1.9e-14 83.2 149 40.9
VMungo0647G2017 Vigna mungo HOM05D007089 ORTHO05D008959 1.9e-14 83.2 127 40.2
Lsat_1_v5_gn_5_30021 Lactuca sativa HOM05D007089 ORTHO05D008959 9.2e-14 80.9 162 40.1
Phvul.001G016200 Phaseolus vulgaris HOM05D007089 ORTHO05D008959 1.6e-13 80.1 148 38.5
Os03g0198900 Oryza sativa ssp. japonica HOM05D007089 ORTHO05D008959 1.3e-12 77.0 166 32.5
unitig_8.g3115 Utricularia gibba HOM05D007089 ORTHO05D008959 8.6e-12 74.3 160 30.6
CDE01G0194 Ceratophyllum demersum HOM05D007089 ORTHO05D008959 4.3e-11 72.0 57 63.2
SEGI_08195 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 9.5e-11 70.9 162 31.5
SEGI_17198 Sequoiadendron giganteum HOM05D007089 ORTHO05D008959 9.5e-11 70.9 162 31.5
Actinidia38023 Actinidia chinensis HOM05D007089 ORTHO05D008959 1.7e-07 60.1 44 65.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 8.4e-07 57.8 49 57.1
CARHR019930 Cardamine hirsuta HOM05D007089 ORTHO05D008959 1.9e-06 56.6 87 41.4
ECA246G5250 Erigeron canadensis HOM05D007089 ORTHO05D008959 4.2e-06 55.5 122 33.6
Cpa.g.sc64.54 Carica papaya HOM05D007089 ORTHO05D008959 7.1e-06 54.7 134 34.3


User provided reference genes

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