Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 2.5e-28 127.9 57 100.0
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 1.2e-22 109.0 57 86.0
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 1.0e-21 105.9 57 84.2
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 1.8e-21 105.1 57 82.5
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.1e-21 103.6 57 78.9
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 8.7e-21 102.8 52 86.5
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 3.3e-20 100.9 57 80.7
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 7.4e-20 99.8 55 81.8
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 7.4e-20 99.8 53 83.0
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 7.4e-20 99.8 57 73.7
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 9.7e-20 99.4 55 78.2
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 9.7e-20 99.4 56 80.4
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 9.7e-20 99.4 56 80.4
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 9.7e-20 99.4 57 78.9
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.6e-19 98.6 53 79.2
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 2.2e-19 98.2 53 84.9
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.2e-19 98.2 53 83.0
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 4.8e-19 97.1 53 79.2
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 4.8e-19 97.1 57 75.4
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 4.8e-19 97.1 55 78.2
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 4.8e-19 97.1 53 83.0
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 6.3e-19 96.7 56 78.6
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 8.2e-19 96.3 56 75.0
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.1e-18 95.9 53 81.1
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 1.1e-18 95.9 53 79.2
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.4e-18 95.5 52 78.8
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 1.4e-18 95.5 56 75.0
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.4e-18 94.7 55 76.4
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 2.4e-18 94.7 59 78.0
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 3.1e-18 94.4 53 81.1
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.1e-18 94.4 53 81.1
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 3.1e-18 94.4 55 76.4
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 4.1e-18 94.0 55 74.5
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 4.1e-18 94.0 53 77.4
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 4.1e-18 94.0 55 74.5
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.3e-18 93.6 55 78.2
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 5.3e-18 93.6 55 78.2
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 6.9e-18 93.2 55 74.5
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.2e-17 92.4 55 78.2
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.5e-17 92.0 53 77.4
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.5e-17 92.0 53 77.4
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 1.5e-17 92.0 53 77.4
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.5e-17 92.0 53 77.4
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.0e-17 91.7 53 75.5
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 2.0e-17 91.7 55 74.5
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 2.6e-17 91.3 53 77.4
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 2.6e-17 91.3 53 77.4
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 2.6e-17 91.3 59 74.6
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 2.6e-17 91.3 50 78.0
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 3.4e-17 90.9 45 86.7
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 75.5
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.9e-17 90.1 53 79.2
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 5.9e-17 90.1 55 72.7
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 5.9e-17 90.1 55 72.7
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 7.6e-17 89.7 56 73.2
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 7.6e-17 89.7 53 71.7
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 7.6e-17 89.7 55 78.2
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.0e-16 89.4 55 76.4
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.0e-16 89.4 55 76.4
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 1.0e-16 89.4 55 76.4
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.7e-16 88.6 54 75.9
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 1.7e-16 88.6 55 72.7
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 2.9e-16 87.8 53 79.2
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 2.9e-16 87.8 55 70.9
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 2.9e-16 87.8 52 75.0
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.8e-16 87.4 52 75.0
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.8e-16 87.4 52 75.0
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 3.8e-16 87.4 52 75.0
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 5.0e-16 87.0 48 77.1
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 5.0e-16 87.0 55 72.7
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 6.5e-16 86.7 53 75.5
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 8.5e-16 86.3 53 69.8
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.9e-15 85.1 56 66.1
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.9e-15 85.1 53 73.6
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 2.5e-15 84.7 56 69.6
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 4.2e-15 84.0 50 70.0
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 5.5e-15 83.6 53 69.8
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 7.2e-15 83.2 55 63.6
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.2e-14 82.4 53 73.6
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 2.1e-14 81.6 57 68.4
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 2.1e-14 81.6 55 67.3
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 2.7e-14 81.3 57 66.7
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.6e-14 80.9 53 69.8
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.6e-14 80.9 53 69.8
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 4.6e-14 80.5 53 69.8
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.6e-14 80.5 53 69.8
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 4.6e-14 80.5 53 67.9
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 1.0e-13 79.3 53 73.6
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 3.9e-13 77.4 57 70.2
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.9e-13 77.4 50 68.0
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 3.9e-13 77.4 52 69.2
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 6.7e-13 76.6 53 62.3
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 7.4e-12 73.2 41 80.5
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.7e-11 70.9 79 50.6
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.7e-11 70.9 79 50.6
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 8.2e-11 69.7 95 43.2
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 1.8e-10 68.6 40 80.0
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 2.4e-10 68.2 43 72.1
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 6.9e-10 66.6 34 82.4
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 5.9e-09 63.5 41 63.4
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 1.0e-08 62.8 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.0e-08 62.8 28 92.9
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.9e-08 61.2 40 70.0
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.9e-08 61.2 31 87.1
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 1.9e-07 58.5 31 77.4
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.9e-07 58.5 31 80.6
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 4.2e-07 57.4 39 59.0
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 5.5e-07 57.0 31 77.4
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 7.2e-07 56.6 38 68.4
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 4.7e-06 53.9 35 71.4
MD12G1007100 Malus domestica HOM05D006514 ORTHO05D008138 4.7e-06 53.9 34 70.6


User provided reference genes

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