Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 7.0e-47 190.3 96 100.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 2.4e-23 112.1 99 66.7
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 2.4e-23 112.1 97 64.9
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 4.6e-22 107.8 100 61.0
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.6e-20 100.9 99 55.6
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.8e-19 98.6 91 61.5
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 1.1e-18 96.7 100 57.0
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 3.4e-17 91.7 109 51.4
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.8e-17 90.9 99 52.5
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 7.6e-17 90.5 98 51.0
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.3e-16 89.7 99 49.5
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.3e-16 89.7 95 52.6
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 6.4e-16 87.4 95 52.6
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.1e-15 86.7 110 54.5
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 1.1e-15 86.7 99 48.5
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 2.4e-15 85.5 99 47.5
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 7.1e-15 84.0 101 46.5
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 9.2e-15 83.6 99 50.5
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.6e-14 82.8 98 49.0
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.6e-14 82.8 105 53.3
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 2.1e-14 82.4 99 51.5
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.1e-14 82.4 99 47.5
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.7e-14 82.0 89 53.9
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 4.6e-14 81.3 111 45.9
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 4.6e-14 81.3 98 45.9
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 7.8e-14 80.5 102 48.0
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.0e-13 80.1 101 45.5
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 1.3e-13 79.7 117 44.4
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.9e-13 78.2 99 46.5
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 5.1e-13 77.8 108 50.0
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 5.1e-13 77.8 84 46.4
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 6.6e-13 77.4 100 49.0
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.5e-12 76.3 94 53.2
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.9e-12 75.9 101 44.6
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.9e-12 75.9 96 49.0
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 1.9e-12 75.9 109 45.9
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.9e-12 75.9 96 43.8
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.9e-12 75.9 96 43.8
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 1.9e-12 75.9 93 49.5
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.5e-12 75.5 92 50.0
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 4.3e-12 74.7 97 46.4
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 7.3e-12 73.9 100 49.0
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 7.3e-12 73.9 105 50.5
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 9.6e-12 73.6 92 53.3
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.6e-12 73.6 93 48.4
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 9.6e-12 73.6 108 40.7
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 9.6e-12 73.6 94 51.1
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 9.6e-12 73.6 89 48.3
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 9.6e-12 73.6 98 43.9
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 1.2e-11 73.2 104 43.3
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 1.2e-11 73.2 99 49.5
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.6e-11 72.8 96 42.7
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.1e-11 72.4 108 39.8
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 2.8e-11 72.0 101 46.5
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 3.6e-11 71.6 86 45.3
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 3.6e-11 71.6 88 54.5
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 4.7e-11 71.2 99 45.5
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 8.1e-11 70.5 92 48.9
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.1e-11 70.5 116 42.2
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.1e-11 70.5 105 45.7
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 8.1e-11 70.5 100 50.0
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 8.1e-11 70.5 100 51.0
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 8.1e-11 70.5 92 52.2
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 8.1e-11 70.5 95 44.2
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 1.1e-10 70.1 41 78.0
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 1.1e-10 70.1 110 45.5
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 1.1e-10 70.1 89 51.7
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 1.1e-10 70.1 99 43.4
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 1.1e-10 70.1 92 45.7
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.4e-10 69.7 110 40.0
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 1.8e-10 69.3 100 44.0
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.8e-10 69.3 95 44.2
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 1.8e-10 69.3 116 41.4
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.8e-10 69.3 95 48.4
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.0e-10 68.2 81 45.7
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.0e-10 68.2 108 39.8
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 5.2e-10 67.8 104 45.2
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 5.2e-10 67.8 109 43.1
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 5.2e-10 67.8 87 47.1
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 6.8e-10 67.4 95 46.3
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 6.8e-10 67.4 106 44.3
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 6.8e-10 67.4 95 46.3
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 6.8e-10 67.4 87 49.4
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.9e-10 67.0 55 60.0
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 1.2e-09 66.6 94 46.8
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.2e-09 66.6 88 46.6
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 1.5e-09 66.2 56 64.3
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 2.6e-09 65.5 93 41.9
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.6e-09 65.5 90 47.8
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.4e-09 65.1 94 42.6
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.4e-09 64.7 95 44.2
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 5.8e-09 64.3 91 47.3
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.6e-09 63.9 95 44.2
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.6e-09 63.9 95 44.2
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 7.6e-09 63.9 104 41.3
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 7.6e-09 63.9 91 41.8
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 9.9e-09 63.5 83 45.8
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 1.3e-08 63.2 93 44.1
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 4.9e-08 61.2 108 40.7
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 4.9e-08 61.2 79 44.3
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 8.4e-08 60.5 98 38.8
Sabra08G0145000 Salix brachista HOM05D004965 ORTHO05D004401 8.4e-08 60.5 83 45.8
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 1.1e-07 60.1 63 50.8
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 1.1e-07 60.1 98 38.8
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 1.1e-07 60.1 90 40.0
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 1.1e-07 60.1 33 78.8
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 1.1e-07 60.1 33 78.8
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 1.4e-07 59.7 91 42.9
Sc04g0008760 Simmondsia chinensis HOM05D004965 ORTHO05D004401 1.4e-07 59.7 80 46.2
TWI75G1371 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.4e-07 59.7 98 43.9
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 1.9e-07 59.3 102 41.2
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 1.9e-07 59.3 88 42.0
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 1.9e-07 59.3 93 37.6
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 2.4e-07 58.9 87 40.2
HanXRQChr08g0209111 Helianthus annuus HOM05D004965 ORTHO05D004401 2.4e-07 58.9 29 89.7
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 3.2e-07 58.5 89 41.6
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 3.2e-07 58.5 88 39.8
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 5.4e-07 57.8 50 58.0
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 7.1e-07 57.4 89 43.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 7.1e-07 57.4 91 39.6
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 7.1e-07 57.4 29 89.7
AL2G29210 Arabidopsis lyrata HOM05D010176 ORTHO05D012455 9.3e-07 57.0 63 49.2
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 1.2e-06 56.6 100 43.0
Sed0010056 Sechium edule HOM05D031204 ORTHO05D004401 1.2e-06 56.6 93 37.6
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.2e-06 56.6 87 43.7
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 1.6e-06 56.2 60 48.3
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 1.6e-06 56.2 98 36.7
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 1.6e-06 56.2 89 40.4
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 1.6e-06 56.2 97 43.3
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 2.1e-06 55.8 34 76.5
DCAR_007120 Daucus carota HOM05D004965 ORTHO05D004401 2.1e-06 55.8 98 41.8
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 2.1e-06 55.8 85 37.6
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 2.7e-06 55.5 54 53.7
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 3.5e-06 55.1 89 40.4
ClCG05G024840 Citrullus lanatus HOM05D031204 ORTHO05D004401 3.5e-06 55.1 86 41.9
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 3.5e-06 55.1 95 34.7
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 3.5e-06 55.1 92 38.0
PSO591G0153 Papaver somniferum HOM05D044922 ORTHO05D050178 4.6e-06 54.7 75 45.3
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 6.0e-06 54.3 87 42.5
Sc10g0004060 Simmondsia chinensis HOM05D004965 ORTHO05D004401 6.0e-06 54.3 107 40.2
Carub.0002s1667 Capsella rubella HOM05D010176 ORTHO05D012455 7.8e-06 53.9 55 54.5
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 7.8e-06 53.9 100 38.0
Oeu011717.2 Olea europaea HOM05D004965 ORTHO05D004401 7.8e-06 53.9 85 43.5


User provided reference genes

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