Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011431 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 2.1e-55 218.8 108 100.0
CSS0043730 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 2.1e-55 218.8 108 100.0
CSS0032551 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 9.6e-53 209.9 108 93.5
CSS0043606 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 8.1e-52 206.8 107 94.4
CSS0033374 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 2.6e-50 201.8 108 91.7
CSS0046295 Camellia sinensis var. sinensis HOM05D019684 ORTHO05D007567 3.2e-48 194.9 108 90.7
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 5.7e-13 77.8 84 50.0
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 3.1e-11 72.0 64 60.9
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 3.5e-10 68.6 79 46.8
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 1.3e-09 66.6 68 51.5
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 6.5e-09 64.3 64 53.1
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 9.4e-08 60.5 72 43.1
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 1.2e-07 60.1 71 47.9
Dinv42608 Davidia involucrata HOM05D001049 ORTHO05D001986 8.0e-07 57.4 30 86.7
Gohir.A01G126300 Gossypium hirsutum HOM05D001049 ORTHO05D001986 1.4e-06 56.6 30 86.7
Gohir.D01G113900 Gossypium hirsutum HOM05D001049 ORTHO05D001986 1.4e-06 56.6 30 86.7
Gorai.002G138900 Gossypium raimondii HOM05D001049 ORTHO05D001986 1.4e-06 56.6 30 86.7
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 2.3e-06 55.8 63 47.6
CSS0024879 Camellia sinensis var. sinensis HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Duzib041G0510 Durio zibethinus HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Duzib093G0120 Durio zibethinus HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Glyma.06G097200 Glycine max HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Gohir.A05G219300 Gossypium hirsutum HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Gohir.D05G221900 Gossypium hirsutum HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Gorai.009G229300 Gossypium raimondii HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Hma1.2p1_0125F.1_g058820 Hydrangea macrophylla HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
MD08G1199100 Malus domestica HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
MD15G1386100 Malus domestica HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 3.0e-06 55.5 64 42.2
PGR042G3763 Punica granatum HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
Thecc.08G071500 Theobroma cacao HOM05D001049 ORTHO05D001986 3.0e-06 55.5 25 96.0
BcaC09g50859 Brassica carinata HOM05D001049 ORTHO05D001986 4.0e-06 55.1 32 78.1
CANSAT25G1018 Cannabis sativa HOM05D001049 ORTHO05D001986 4.0e-06 55.1 31 74.2
Manes.18G058200 Manihot esculenta HOM05D001049 ORTHO05D001986 4.0e-06 55.1 25 96.0
Prupe.1G532800 Prunus persica HOM05D001049 ORTHO05D001986 4.0e-06 55.1 25 96.0
THA.LOC104806881 Tarenaya hassleriana HOM05D001049 ORTHO05D001986 4.0e-06 55.1 27 88.9
arahy.Tifrunner.gnm1.ann1.BQAG9X Arachis hypogaea HOM05D001049 ORTHO05D001986 6.7e-06 54.3 30 83.3
arahy.Tifrunner.gnm1.ann1.Q0I0E2 Arachis hypogaea HOM05D001049 ORTHO05D001986 6.7e-06 54.3 30 83.3
CARHR231910 Cardamine hirsuta HOM05D001049 ORTHO05D001986 6.7e-06 54.3 30 83.3
CARHR231920 Cardamine hirsuta HOM05D001049 ORTHO05D001986 6.7e-06 54.3 30 83.3
Cc10_g15930 Coffea canephora HOM05D001049 ORTHO05D001986 6.7e-06 54.3 26 88.5
Lalb_Chr04g0252811 Lupinus albus HOM05D001049 ORTHO05D001986 6.7e-06 54.3 25 92.0
Lalb_Chr11g0064941 Lupinus albus HOM05D001049 ORTHO05D001986 6.7e-06 54.3 24 100.0
Phvul.008G182200 Phaseolus vulgaris HOM05D001049 ORTHO05D001986 6.7e-06 54.3 25 92.0
Phvul.009G036200 Phaseolus vulgaris HOM05D001049 ORTHO05D001986 6.7e-06 54.3 25 92.0
Rhsim07G0212200 Rhododendron simsii HOM05D001049 ORTHO05D001986 6.7e-06 54.3 30 80.0
Sc15g0002720 Simmondsia chinensis HOM05D001049 ORTHO05D001986 6.7e-06 54.3 25 92.0
THA.LOC104799789 Tarenaya hassleriana HOM05D001049 ORTHO05D001986 6.7e-06 54.3 25 92.0
VMungo1309G0307 Vigna mungo HOM05D001049 ORTHO05D001986 6.7e-06 54.3 30 80.0
A03p55340 Brassica napus HOM05D001049 ORTHO05D001986 8.8e-06 53.9 24 95.8
C01p19840 Brassica napus HOM05D001049 ORTHO05D001986 8.8e-06 53.9 27 88.9
BolC1t01911H Brassica oleracea HOM05D001049 ORTHO05D001986 8.8e-06 53.9 27 88.9
FvH4_5g34830 Fragaria vesca HOM05D001049 ORTHO05D001986 8.8e-06 53.9 30 76.7
FAN04G0104 Fragaria x ananassa HOM05D001049 ORTHO05D001986 8.8e-06 53.9 30 76.7
FAN08G0165 Fragaria x ananassa HOM05D001049 ORTHO05D001986 8.8e-06 53.9 30 76.7
FAN18G0905 Fragaria x ananassa HOM05D001049 ORTHO05D001986 8.8e-06 53.9 30 76.7
Hund26816 Selenicereus undatus HOM05D001049 ORTHO05D001986 8.8e-06 53.9 25 92.0


User provided reference genes

Program Settings