Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 4.7e-208 727.6 370 100.0
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 5.6e-177 624.4 337 95.3
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.8e-174 614.4 367 84.2
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.1e-164 583.6 344 85.5
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.9e-164 582.8 354 82.5
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 5.4e-164 581.3 358 83.0
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.6e-163 578.2 343 82.8
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 6.0e-163 577.8 334 87.7
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.7e-162 576.2 338 84.6
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 7.3e-161 570.9 363 81.0
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 2.8e-160 568.9 339 83.8
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 6.2e-160 567.8 333 85.6
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.5e-158 563.1 334 85.0
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 3.4e-158 562.0 353 81.3
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 4.5e-158 561.6 358 80.4
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 7.6e-158 560.8 362 79.6
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 9.9e-158 560.5 363 79.1
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.7e-157 559.7 362 79.6
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.9e-157 558.9 365 80.0
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 6.4e-157 557.8 343 81.9
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 6.4e-157 557.8 353 81.9
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 8.4e-157 557.4 356 79.8
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 8.4e-157 557.4 356 79.8
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.1e-156 557.0 359 80.2
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.1e-156 557.0 340 82.6
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.1e-156 557.0 343 81.0
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.4e-156 555.8 360 80.3
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.4e-156 555.8 362 77.9
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.4e-156 555.8 356 79.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 3.2e-156 555.4 340 82.9
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 5.4e-156 554.7 338 81.7
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 9.3e-156 553.9 355 78.9
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.7e-155 552.4 363 78.2
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 3.5e-155 552.0 355 77.7
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.0e-154 550.4 355 77.5
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.0e-154 550.4 376 76.9
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.8e-154 549.7 358 78.5
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.5e-153 546.6 357 78.4
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 5.6e-153 544.7 355 77.5
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 5.6e-153 544.7 354 78.0
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 7.4e-153 544.3 363 78.5
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.6e-152 543.1 359 77.2
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 3.7e-152 542.0 359 77.2
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 8.1e-152 540.8 358 77.1
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.1e-151 540.4 355 79.4
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.1e-151 540.4 355 77.5
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 1.1e-151 540.4 362 77.6
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 1.4e-151 540.0 362 77.6
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 1.8e-151 539.7 320 84.1
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 3.1e-151 538.9 369 75.1
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 4.0e-151 538.5 348 79.0
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.2e-150 537.0 358 77.7
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.0e-150 536.2 304 87.8
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.6e-150 535.8 335 80.0
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.6e-150 534.3 352 76.7
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 1.0e-149 533.9 357 75.9
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.0e-149 533.9 360 75.6
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 1.3e-149 533.5 359 77.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.7e-149 533.1 361 73.7
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 1.7e-149 533.1 356 76.4
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.9e-149 532.3 358 77.1
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.8e-149 531.9 368 75.3
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 3.8e-149 531.9 322 82.0
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 6.5e-149 531.2 344 78.8
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.4e-148 530.0 344 78.8
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.9e-148 529.6 352 76.4
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.9e-148 529.6 368 75.3
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.5e-148 529.3 381 73.0
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 2.5e-148 529.3 358 77.4
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 5.5e-148 528.1 358 77.1
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.6e-147 526.6 349 76.8
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 3.5e-147 525.4 331 78.5
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 3.5e-147 525.4 356 77.0
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 4.6e-147 525.0 358 76.8
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 7.9e-147 524.2 355 73.5
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 5.1e-146 521.5 333 78.7
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.9e-145 519.6 357 75.6
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.3e-145 518.8 358 76.0
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 4.3e-145 518.5 459 64.1
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 5.7e-145 518.1 284 90.5
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 5.7e-145 518.1 352 72.7
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 7.4e-145 517.7 330 76.7
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 2.8e-144 515.8 349 73.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 6.2e-144 514.6 370 71.1
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.8e-143 513.1 332 76.8
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 3.8e-141 505.4 312 80.8
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 4.2e-140 501.9 356 74.4
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.5e-139 498.8 347 73.2
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 6.1e-139 498.0 366 68.3
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 7.9e-139 497.7 330 77.3
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 2.3e-138 496.1 327 76.1
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 3.9e-138 495.4 330 75.8
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 3.7e-136 488.8 331 75.2
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 1.4e-135 486.9 362 67.4
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 3.1e-135 485.7 368 69.8
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 5.3e-135 485.0 344 73.0
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 5.3e-135 485.0 363 69.7
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 6.9e-135 484.6 301 79.7
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 9.0e-135 484.2 359 72.1
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.3e-133 480.3 370 65.4
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 3.8e-133 478.8 335 73.7
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.0e-133 478.4 313 77.6
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.2e-132 474.6 345 71.9
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 1.6e-131 473.4 340 70.3
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 6.7e-130 468.0 309 77.0
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 6.7e-130 468.0 327 74.9
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 7.4e-129 464.5 339 70.2
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.7e-128 463.4 282 83.3
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 8.2e-128 461.1 358 67.9
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 2.4e-127 459.5 339 70.5
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 4.1e-127 458.8 355 67.6
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 9.1e-127 457.6 354 68.1
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.2e-126 457.2 340 70.3
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 1.2e-126 457.2 341 70.7
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 4.5e-126 455.3 339 69.0
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 5.9e-126 454.9 360 66.4
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 5.9e-126 454.9 360 66.4
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.0e-125 454.1 339 70.2
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.0e-125 454.1 356 67.7
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.3e-125 453.8 344 69.5
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 6.5e-125 451.4 340 67.1
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 7.2e-124 448.0 359 61.6
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 9.4e-124 447.6 470 55.3
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 2.7e-123 446.0 331 66.2
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 2.3e-122 443.0 340 67.4
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 2.3e-122 443.0 340 67.4
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 2.0e-121 439.9 352 63.9
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 2.0e-121 439.9 363 60.3
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 9.7e-121 437.6 341 67.4
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 2.8e-120 436.0 352 63.6
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 8.2e-120 434.5 326 68.7
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 2.0e-118 429.9 333 62.8
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 6.1e-115 418.3 351 61.8
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.2e-109 399.8 339 63.4
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 9.8e-105 384.4 286 67.5
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 4.5e-102 375.6 299 67.6
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.0e-101 374.4 280 71.1
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 3.2e-100 369.4 221 82.4
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 9.1e-95 351.3 324 54.6
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.0e-93 347.8 261 66.7
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 2.9e-93 346.3 334 53.6
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 6.8e-90 335.1 335 54.9
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.2e-89 334.3 214 79.4
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.4e-87 325.5 271 58.7
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.0e-85 321.2 203 78.8
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.3e-85 320.9 222 73.9
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 5.0e-85 318.9 346 49.7
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 6.6e-85 318.5 203 80.3
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 4.0e-82 309.3 222 72.1
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 4.0e-82 309.3 227 70.9
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 5.4e-79 298.9 283 58.3
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 1.2e-65 254.6 343 42.3
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.1e-59 233.8 167 73.1
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.0e-58 229.6 138 84.1
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 1.8e-50 204.1 131 77.9
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 5.8e-49 199.1 134 72.4
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.1e-44 184.9 165 57.6
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.6e-38 164.5 90 86.7
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 3.9e-37 159.8 108 76.9
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.5e-28 130.6 92 67.4
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 6.3e-27 125.9 268 29.1
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.0e-21 108.6 284 27.8
BcaB01g01266 Brassica carinata HOM05D000313 ORTHO05D000065 2.7e-06 57.4 37 78.4


User provided reference genes

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