Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 1.2e-44 183.7 182 100.0
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.1e-20 103.2 96 76.0
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 4.8e-20 102.1 91 83.5
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 7.6e-18 94.7 92 75.0
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 7.6e-18 94.7 89 59.6
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 2.9e-17 92.8 94 81.9
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 3.8e-17 92.4 97 71.1
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 4.9e-17 92.0 93 72.0
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.4e-17 91.7 89 67.4
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.4e-17 91.7 101 74.3
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.1e-16 90.9 89 67.4
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-16 90.9 92 78.3
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-16 90.9 92 78.3
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.4e-16 90.5 94 68.1
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 2.4e-16 89.7 101 70.3
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 4.2e-16 89.0 96 75.0
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 1.6e-15 87.0 91 59.3
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.6e-15 87.0 89 75.3
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 2.1e-15 86.7 99 66.7
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 2.7e-15 86.3 85 69.4
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 3.5e-15 85.9 95 70.5
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 3.5e-15 85.9 95 70.5
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 7.9e-15 84.7 91 69.2
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.3e-14 84.0 95 73.7
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 1.8e-14 83.6 93 69.9
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 1.8e-14 83.6 92 58.7
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.9e-14 82.4 93 75.3
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 3.9e-14 82.4 89 51.7
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.9e-14 82.4 49 75.5
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 6.7e-14 81.6 88 65.9
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 8.7e-14 81.3 55 69.1
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 1.1e-13 80.9 86 66.3
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 1.5e-13 80.5 93 57.0
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 3.3e-13 79.3 89 67.4
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.3e-13 79.0 89 78.7
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.3e-13 79.0 89 78.7
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 4.3e-13 79.0 87 65.5
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 5.6e-13 78.6 101 67.3
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 5.6e-13 78.6 48 70.8
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 7.4e-13 78.2 89 77.5
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 7.4e-13 78.2 86 70.9
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 9.6e-13 77.8 95 64.2
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 9.6e-13 77.8 95 64.2
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 9.6e-13 77.8 43 81.4
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.3e-12 77.4 85 71.8
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 1.6e-12 77.0 93 71.0
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 2.1e-12 76.6 93 58.1
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 2.1e-12 76.6 95 64.2
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 3.6e-12 75.9 47 70.2
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.6e-12 75.9 48 68.8
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.8e-12 75.5 89 64.0
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 4.8e-12 75.5 79 72.2
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 6.2e-12 75.1 84 75.0
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 6.2e-12 75.1 96 71.9
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 8.1e-12 74.7 48 70.8
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.1e-11 74.3 93 64.5
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.4e-11 73.9 89 69.7
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 1.4e-11 73.9 47 70.2
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.4e-11 73.9 43 76.7
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.8e-11 73.6 43 72.1
Oeu046050.1 Olea europaea HOM05D002879 ORTHO05D002930 1.8e-11 73.6 75 84.0
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 3.1e-11 72.8 49 65.3
Hma1.2p1_0240F.1_g100350 Hydrangea macrophylla HOM05D002879 ORTHO05D002930 3.1e-11 72.8 72 77.8
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.1e-11 72.8 43 72.1
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.0e-11 72.4 42 69.0
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 5.3e-11 72.0 47 70.2
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 5.3e-11 72.0 91 70.3
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 5.3e-11 72.0 91 70.3
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 5.3e-11 72.0 89 69.7
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 6.9e-11 71.6 81 72.8
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 9.0e-11 71.2 89 47.2
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 9.0e-11 71.2 48 62.5
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 9.0e-11 71.2 93 65.6
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.2e-10 70.9 97 72.2
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 1.2e-10 70.9 88 71.6
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 1.5e-10 70.5 93 65.6
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.5e-10 70.5 89 58.4
Eucgr.F04219 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.0e-10 70.1 101 60.4
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.0e-10 70.1 89 70.8
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.0e-10 70.1 86 73.3
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 2.0e-10 70.1 43 65.1
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 2.6e-10 69.7 89 65.2
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 2.6e-10 69.7 88 65.9
AUR62026683 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.4e-10 69.3 101 65.3
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.4e-10 69.3 96 58.3
arahy.Tifrunner.gnm1.ann1.HFKS8W Arachis hypogaea HOM05D002879 ORTHO05D002930 4.5e-10 68.9 93 65.6
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 4.5e-10 68.9 37 75.7
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 5.8e-10 68.6 88 42.0
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 7.6e-10 68.2 93 61.3
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 9.9e-10 67.8 40 77.5
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 9.9e-10 67.8 40 77.5
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 9.9e-10 67.8 85 64.7
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 9.9e-10 67.8 85 64.7
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.3e-09 67.4 43 67.4
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 2.2e-09 66.6 48 66.7
arahy.Tifrunner.gnm1.ann1.MR10IA Arachis hypogaea HOM05D002879 ORTHO05D002930 4.9e-09 65.5 93 64.5
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 4.9e-09 65.5 42 69.0
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 4.9e-09 65.5 86 70.9
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 6.4e-09 65.1 93 67.7
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 6.4e-09 65.1 43 65.1
Prupe.8G034200 Prunus persica HOM05D002879 ORTHO05D002930 6.4e-09 65.1 68 85.3
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 8.4e-09 64.7 78 76.9
Zm00001eb091920 Zea mays HOM05D002879 ORTHO05D002930 8.4e-09 64.7 77 77.9
COL.COLO4_29859 Corchorus olitorius HOM05D002879 ORTHO05D002930 1.1e-08 64.3 89 64.0
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.1e-08 64.3 82 58.5
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 1.4e-08 63.9 46 67.4
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.4e-08 63.2 78 70.5
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 2.4e-08 63.2 95 57.9
Sc26g0003520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 3.2e-08 62.8 86 70.9
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 4.2e-08 62.4 92 47.8
Eucgr.F02697 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.2e-08 62.4 89 61.8
Sed0017062 Sechium edule HOM05D002879 ORTHO05D002930 4.2e-08 62.4 95 60.0
SEGI_17221 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 4.2e-08 62.4 50 54.0
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.2e-08 62.4 43 67.4
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 5.5e-08 62.0 52 55.8
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 5.5e-08 62.0 90 58.9
Hund26910 Selenicereus undatus HOM05D002879 ORTHO05D002930 7.1e-08 61.6 91 69.2
Sc26g0002500 Simmondsia chinensis HOM05D002879 ORTHO05D002930 7.1e-08 61.6 86 70.9
CSS0011810 Camellia sinensis var. sinensis HOM05D063875 ORTHO05D002930 9.3e-08 61.2 87 71.3
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.2e-07 60.8 43 60.5
Actinidia10641 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.6e-07 60.5 93 64.5
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 1.6e-07 60.5 93 53.8
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 2.1e-07 60.1 43 65.1
unitig_747.g21665 Utricularia gibba HOM05D002879 ORTHO05D002930 2.7e-07 59.7 46 54.3
Zm00001eb362480 Zea mays HOM05D002879 ORTHO05D002930 2.7e-07 59.7 49 51.0
AUR62040592 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.5e-07 59.3 101 61.4
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 4.6e-07 58.9 95 57.9
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.6e-07 58.9 44 63.6
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 6.0e-07 58.5 89 55.1
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.0e-07 58.5 86 60.5
PGR044G2207 Punica granatum HOM05D002879 ORTHO05D002930 6.0e-07 58.5 89 62.9
COL.COLO4_29858 Corchorus olitorius HOM05D002879 ORTHO05D002930 7.9e-07 58.2 61 86.9
SMO351G0439 Selaginella moellendorffii HOM05D002879 ORTHO05D002930 7.9e-07 58.2 83 59.0
Sopen04g027610 Solanum pennellii HOM05D002879 ORTHO05D002930 7.9e-07 58.2 94 60.6
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 1.0e-06 57.8 93 41.9
CsaV3_6G002590 Cucumis sativus L. HOM05D035606 ORTHO05D002930 1.0e-06 57.8 94 60.6
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.0e-06 57.8 75 41.3
Os11g0167800 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.3e-06 57.4 92 65.2
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 1.3e-06 57.4 93 65.6
Cc10_g14960 Coffea canephora HOM05D002879 ORTHO05D002930 1.8e-06 57.0 88 63.6
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 1.8e-06 57.0 94 37.2
QL02p029925 Quercus lobata HOM05D002879 ORTHO05D002930 1.8e-06 57.0 63 66.7
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 2.3e-06 56.6 85 65.9
vmacro01467 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.3e-06 56.6 43 62.8
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.0e-06 56.2 49 51.0
Eucgr.E02068 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.9e-06 55.8 49 55.1
Os01g0963600 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 3.9e-06 55.8 41 56.1
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.9e-06 55.8 53 54.7
SalBow7G0277 Salvia bowleyana HOM05D058840 ORTHO05D002930 3.9e-06 55.8 88 67.0
SalBow7G2213 Salvia bowleyana HOM05D058840 ORTHO05D002930 3.9e-06 55.8 88 67.0
MELO3C025025.2 Cucumis melo HOM05D035606 ORTHO05D002930 5.1e-06 55.5 94 58.5
Sc26g0002490 Simmondsia chinensis HOM05D002879 ORTHO05D002930 5.1e-06 55.5 78 39.7
Zm00001eb407710 Zea mays HOM05D002879 ORTHO05D002930 8.7e-06 54.7 70 77.1


User provided reference genes

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