Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043705 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 1.2e-49 199.5 97 100.0
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 5.3e-18 94.4 46 100.0
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 5.3e-18 94.4 46 100.0
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 2.6e-17 92.0 46 95.7
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 3.4e-17 91.7 46 95.7
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 7.6e-17 90.5 46 93.5
Actinidia29484 Actinidia chinensis HOM05D006317 ORTHO05D007852 1.0e-16 90.1 46 91.3
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 2.2e-16 89.0 47 87.2
vmacro16444 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 2.2e-16 89.0 44 95.5
vmacro00858 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 4.9e-16 87.8 46 93.5
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 8.4e-16 87.0 45 91.1
HanXRQChr05g0148711 Helianthus annuus HOM05D006317 ORTHO05D007852 1.1e-15 86.7 46 87.0
FAN27G3154 Fragaria x ananassa HOM05D006317 ORTHO05D007852 1.4e-15 86.3 46 84.8
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 1.4e-15 86.3 46 87.0
Peaxi162Scf01003g00121 Petunia axillaris HOM05D006317 ORTHO05D007852 1.9e-15 85.9 46 82.6
SGA_v2.0_scaffold25G11134 Striga asiatica HOM05D006317 ORTHO05D007852 1.9e-15 85.9 46 84.8
unitig_22.g5398 Utricularia gibba HOM05D006317 ORTHO05D007852 1.9e-15 85.9 46 84.8
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 2.5e-15 85.5 46 84.8
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 2.5e-15 85.5 46 84.8
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 2.5e-15 85.5 46 84.8
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 3.2e-15 85.1 47 83.0
Oeu021883.1 Olea europaea HOM05D006317 ORTHO05D007852 3.2e-15 85.1 46 87.0
MSTRG.25364 Avicennia marina HOM05D006317 ORTHO05D007852 4.2e-15 84.7 46 84.8
ECA246G3352 Erigeron canadensis HOM05D006317 ORTHO05D007852 4.2e-15 84.7 45 86.7
Lsat_1_v5_gn_6_109060 Lactuca sativa HOM05D006317 ORTHO05D007852 4.2e-15 84.7 46 84.8
SalBow2G0856 Salvia bowleyana HOM05D006317 ORTHO05D007852 4.2e-15 84.7 46 84.8
Solyc11g005000.2 Solanum lycopersicum HOM05D006317 ORTHO05D007852 4.2e-15 84.7 46 82.6
Cc10_g12550 Coffea canephora HOM05D006317 ORTHO05D007852 5.5e-15 84.3 46 82.6
Migut.N03266 Erythranthe guttata HOM05D006317 ORTHO05D007852 5.5e-15 84.3 46 87.0
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 7.1e-15 84.0 46 84.8
PGSC0003DMG400006049 Solanum tuberosum HOM05D006317 ORTHO05D007852 7.1e-15 84.0 45 82.2
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 9.3e-15 83.6 46 84.8
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 9.3e-15 83.6 46 84.8
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 9.3e-15 83.6 46 82.6
Sopen11g001020 Solanum pennellii HOM05D006317 ORTHO05D007852 9.3e-15 83.6 46 80.4
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 9.3e-15 83.6 46 84.8
CAN.G342.14 Capsicum annuum HOM05D006317 ORTHO05D007852 1.2e-14 83.2 46 78.3
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 1.2e-14 83.2 46 82.6
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 1.2e-14 83.2 46 82.6
Nitab4.5_0001168g0010 Nicotiana tabacum HOM05D006317 ORTHO05D007852 1.2e-14 83.2 46 78.3
Nitab4.5_0002045g0100 Nicotiana tabacum HOM05D006317 ORTHO05D007852 1.2e-14 83.2 46 78.3
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 1.6e-14 82.8 46 82.6
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 1.6e-14 82.8 46 82.6
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 1.6e-14 82.8 46 82.6
Oeu051968.1 Olea europaea HOM05D006317 ORTHO05D007852 1.6e-14 82.8 46 84.8
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 2.1e-14 82.4 84 53.6
Psat5g085080 Pisum sativum HOM05D006317 ORTHO05D007852 2.1e-14 82.4 46 82.6
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 2.1e-14 82.4 46 80.4
unitig_8.g3836 Utricularia gibba HOM05D006317 ORTHO05D007852 2.1e-14 82.4 46 80.4
CANSAT35G0412 Cannabis sativa HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 82.6
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 80.4
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 82.6
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 82.6
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 82.6
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 82.6
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 82.6
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 82.6
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 2.7e-14 82.0 46 84.8
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 3.5e-14 81.6 46 80.4
arahy.Tifrunner.gnm1.ann1.0GY0RD Arachis hypogaea HOM05D006317 ORTHO05D007852 4.6e-14 81.3 46 80.4
arahy.Tifrunner.gnm1.ann1.ID1H8K Arachis hypogaea HOM05D006317 ORTHO05D007852 4.6e-14 81.3 46 80.4
Sed0014816 Sechium edule HOM05D006317 ORTHO05D007852 4.6e-14 81.3 46 82.6
CDE07G1891 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 6.0e-14 80.9 46 80.4
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 6.0e-14 80.9 46 82.6
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 7.9e-14 80.5 45 82.2
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 1.0e-13 80.1 46 80.4
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 1.0e-13 80.1 46 80.4
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 1.0e-13 80.1 46 80.4
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 1.3e-13 79.7 45 80.0
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 1.8e-13 79.3 46 80.4
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 1.8e-13 79.3 46 80.4
CDE06G2198 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 1.8e-13 79.3 46 78.3
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 1.8e-13 79.3 46 80.4
Ciclev10002865m.g Citrus clementina HOM05D006317 ORTHO05D007852 2.3e-13 79.0 46 78.3
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 2.3e-13 79.0 46 78.3
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 3.0e-13 78.6 46 78.3
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
Nn7g37402 Nelumbo nucifera HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 3.9e-13 78.2 46 78.3
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 5.1e-13 77.8 46 78.3
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 5.1e-13 77.8 46 78.3
Potri.019G066600 Populus trichocarpa HOM05D006317 ORTHO05D007852 5.1e-13 77.8 46 78.3
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 6.7e-13 77.4 46 78.3
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 1.1e-12 76.6 46 78.3
Os05g0486200 Oryza sativa ssp. japonica HOM05D006317 ORTHO05D007852 1.5e-12 76.3 46 76.1
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 2.5e-12 75.5 46 76.1
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 2.5e-12 75.5 46 76.1
Aqoxy1G01739 Aquilegia oxysepala HOM05D006317 ORTHO05D007852 3.3e-12 75.1 46 73.9
EL10Ac9g21899 Beta vulgaris HOM05D006317 ORTHO05D007852 3.3e-12 75.1 46 76.1
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 7.4e-12 73.9 45 73.3
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 7.4e-12 73.9 46 78.3
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 9.7e-12 73.6 46 76.1
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 9.7e-12 73.6 46 76.1
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 9.7e-12 73.6 46 76.1
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 9.7e-12 73.6 46 76.1
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 9.7e-12 73.6 46 76.1
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 1.3e-11 73.2 46 69.6
Ah.01g020580 Amaranthus hybridus HOM05D006317 ORTHO05D007852 1.6e-11 72.8 46 71.7
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 2.2e-11 72.4 46 76.1
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 2.2e-11 72.4 46 76.1
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 2.2e-11 72.4 45 75.6
Mapoly0014s0111 Marchantia polymorpha HOM05D006317 ORTHO05D007852 2.8e-11 72.0 46 69.6
HPP92_021212 Vanilla planifolia HOM05D006317 ORTHO05D007852 2.8e-11 72.0 44 75.0
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 3.7e-11 71.6 46 73.9
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 4.8e-11 71.2 46 73.9
AUR62016336 Chenopodium quinoa HOM05D006317 ORTHO05D007852 4.8e-11 71.2 46 71.7
Zm00001eb128810 Zea mays HOM05D006317 ORTHO05D007852 6.3e-11 70.9 46 71.7
AagrBONN_evm.TU.Sc2ySwM_344.4689 Anthoceros agrestis HOM05D006317 ORTHO05D007852 4.1e-10 68.2 46 63.0
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 4.1e-10 68.2 47 72.3
Sabra19G0078300 Salix brachista HOM05D006317 ORTHO05D007852 5.3e-10 67.8 41 78.0
CBR_g12067 Chara braunii HOM05D006317 ORTHO05D007852 1.5e-09 66.2 44 70.5
SMO298G0052 Selaginella moellendorffii HOM05D006317 ORTHO05D007852 1.0e-08 63.5 46 65.2
SHI09189 Sapria himalayana HOM05D006317 ORTHO05D007852 1.3e-08 63.2 57 57.9
Gohir.A02G071601 Gossypium hirsutum HOM05D006317 ORTHO05D007852 1.9e-07 59.3 35 82.9
BcaB03g14260 Brassica carinata HOM05D006317 ORTHO05D007852 3.6e-06 55.1 66 50.0


User provided reference genes

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