Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.8e-174 614.4 308 100.0
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.8e-174 614.4 308 100.0
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 3.8e-171 604.7 308 98.7
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 1.1e-146 523.5 309 83.5
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 1.8e-141 506.1 306 79.1
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 3.0e-139 498.8 309 79.3
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 6.6e-139 497.7 308 77.9
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 8.6e-139 497.3 309 78.0
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 2.5e-138 495.7 308 77.9
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 2.5e-138 495.7 309 77.3
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 4.3e-138 495.0 309 77.7
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 1.2e-137 493.4 309 76.7
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.6e-137 493.0 310 76.8
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.6e-137 493.0 305 79.0
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 8.0e-137 490.7 308 75.0
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 1.1e-136 490.3 309 77.0
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 1.1e-136 490.3 309 78.0
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 3.1e-136 488.8 303 76.6
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.1e-136 488.8 309 77.0
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.2e-135 486.9 308 75.6
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 2.0e-135 486.1 308 75.3
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.6e-135 485.7 309 77.7
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 2.6e-135 485.7 308 74.4
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 5.8e-135 484.6 309 76.4
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 1.7e-134 483.0 310 76.5
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 2.2e-134 482.6 309 76.4
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 2.9e-134 482.3 306 74.5
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 2.9e-134 482.3 302 78.1
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 4.9e-134 481.5 313 76.7
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 6.4e-134 481.1 310 75.8
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 6.4e-134 481.1 319 74.6
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 6.4e-134 481.1 308 74.7
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 8.3e-134 480.7 309 75.7
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.9e-133 479.6 309 76.4
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 2.4e-133 479.2 307 76.2
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 2.4e-133 479.2 310 76.1
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 7.0e-133 477.6 309 74.8
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 7.0e-133 477.6 303 77.2
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 9.2e-133 477.2 339 71.7
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 1.2e-132 476.9 308 74.4
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.2e-132 476.9 310 75.2
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.6e-132 476.5 311 75.2
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 3.5e-132 475.3 309 73.5
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 3.5e-132 475.3 307 73.6
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 7.8e-132 474.2 305 75.7
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 2.3e-131 472.6 303 75.9
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 3.0e-131 472.2 309 76.1
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 3.9e-131 471.9 310 74.5
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 5.0e-131 471.5 309 72.8
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.5e-130 469.9 309 75.7
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 7.3e-130 467.6 308 72.7
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.2e-129 466.8 308 73.7
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.6e-129 466.5 308 74.0
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 6.2e-129 464.5 305 73.8
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.8e-128 463.0 305 73.8
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 3.1e-128 462.2 306 71.6
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 8.9e-128 460.7 349 65.6
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.2e-127 460.3 316 71.2
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 1.3e-126 456.8 305 73.1
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 1.3e-126 456.8 304 73.4
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.7e-126 456.4 306 70.9
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 2.9e-126 455.7 310 72.6
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 2.9e-126 455.7 305 72.8
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 2.9e-126 455.7 306 70.6
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 3.7e-126 455.3 304 73.0
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 4.9e-126 454.9 310 71.9
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 6.4e-126 454.5 310 71.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 6.4e-126 454.5 324 68.8
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 8.3e-126 454.1 305 72.8
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 8.3e-126 454.1 306 70.9
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 1.1e-125 453.8 305 73.4
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.2e-125 452.2 310 71.3
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 4.1e-125 451.8 308 71.1
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 5.4e-125 451.4 387 62.8
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 7.1e-125 451.1 310 71.9
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 7.1e-125 451.1 289 77.2
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.2e-124 450.3 311 71.4
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.2e-124 450.3 304 71.7
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.1e-124 449.5 310 71.0
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 2.1e-124 449.5 310 71.0
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.5e-124 448.7 312 71.5
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 6.0e-124 448.0 305 72.5
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 5.1e-123 444.9 306 72.9
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 6.6e-123 444.5 276 75.4
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.5e-122 443.4 308 70.1
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 1.5e-122 443.4 308 70.1
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 3.3e-122 442.2 313 69.0
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 2.8e-121 439.1 308 71.4
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 6.2e-121 438.0 310 69.7
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.1e-120 435.6 305 68.5
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 6.8e-120 434.5 326 67.8
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 8.9e-120 434.1 305 69.8
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 1.5e-119 433.3 244 84.8
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 3.4e-119 432.2 330 63.9
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 6.6e-115 417.9 240 86.2
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 1.1e-114 417.2 300 67.0
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 9.6e-114 414.1 304 69.4
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 3.6e-113 412.1 277 73.6
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 1.4e-112 410.2 306 63.4
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 4.0e-112 408.7 308 68.8
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.7e-110 403.3 284 69.7
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.2e-108 397.1 309 65.7
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 2.5e-106 389.4 251 76.1
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 3.3e-98 362.5 305 61.0
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 4.8e-97 358.6 241 71.8
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 7.1e-93 344.7 301 57.1
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 3.5e-92 342.4 231 74.0
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 2.5e-90 336.3 295 55.9
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 2.1e-89 333.2 228 72.4
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.2e-85 318.9 303 53.8
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 4.8e-81 305.4 293 53.9
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.0e-74 283.5 147 95.9
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 9.1e-72 274.6 145 95.9
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 1.2e-68 264.2 291 46.7
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.7e-57 227.3 180 58.9
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.3e-54 217.6 289 40.1
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 9.4e-53 211.5 318 40.6
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 4.4e-50 202.6 156 60.3
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 5.5e-45 185.7 184 58.7
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.5e-42 177.6 149 65.8
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 1.1e-37 161.4 149 57.7
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.9e-30 136.7 99 66.7
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 7.3e-29 132.1 96 64.6
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.4e-27 127.9 97 62.9
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.5e-21 107.1 59 83.1
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 9.5e-21 105.1 66 72.7
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.5e-18 97.8 70 61.4
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.2e-17 94.0 69 60.9
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.1e-16 91.7 64 62.5
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 1.3e-06 58.2 31 83.9


User provided reference genes

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