Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043694 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 4.0e-33 144.1 67 100.0
CSS0037508 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 4.6e-29 130.6 65 92.3
CSS0039859 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 7.3e-27 123.2 62 93.5
CSS0048282 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.4e-25 118.2 63 85.7
CSS0010985 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 6.0e-21 103.6 55 87.3
CSS0016703 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 1.0e-20 102.8 54 88.9
vmacro20980 Vaccinium macrocarpon HOM05D003518 ORTHO05D005164 1.3e-20 102.4 63 68.3
Dinv43741 Davidia involucrata HOM05D003518 ORTHO05D005164 3.3e-19 97.8 60 75.0
Actinidia33452 Actinidia chinensis HOM05D003518 ORTHO05D005164 1.1e-17 92.8 63 65.1
Rhsim01G0160000 Rhododendron simsii HOM05D003518 ORTHO05D005164 1.1e-17 92.8 61 63.9
Rhsim07G0023000 Rhododendron simsii HOM05D003518 ORTHO05D005164 1.8e-17 92.0 60 63.3
Dinv32408 Davidia involucrata HOM05D003518 ORTHO05D005164 1.5e-16 89.0 60 66.7
RcHm_v2.0_Chr1g0351731 Rosa chinensis HOM05D003518 ORTHO05D005164 2.6e-16 88.2 61 63.9
FvH4_7g12710 Fragaria vesca HOM05D003518 ORTHO05D005164 4.5e-16 87.4 61 62.3
FAN01G1761 Fragaria x ananassa HOM05D003518 ORTHO05D005164 4.5e-16 87.4 61 62.3
FAN03G3110 Fragaria x ananassa HOM05D003518 ORTHO05D005164 4.5e-16 87.4 63 58.7
FAN06G1131 Fragaria x ananassa HOM05D003518 ORTHO05D005164 4.5e-16 87.4 61 62.3
FAN06G5121 Fragaria x ananassa HOM05D003518 ORTHO05D005164 4.5e-16 87.4 61 62.3
Potri.002G151800 Populus trichocarpa HOM05D003518 ORTHO05D005164 4.5e-16 87.4 60 63.3
GSVIVG01027580001 Vitis vinifera HOM05D003518 ORTHO05D005164 1.3e-15 85.9 58 62.1
CiPaw.01G258000 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.7e-15 85.5 62 54.8
FAN10G3707 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.7e-15 85.5 61 60.7
Prupe.2G151300 Prunus persica HOM05D003518 ORTHO05D005164 1.7e-15 85.5 60 58.3
Duzib133G1143 Durio zibethinus HOM05D003518 ORTHO05D005164 2.9e-15 84.7 60 56.7
FAN10G3827 Fragaria x ananassa HOM05D003518 ORTHO05D005164 2.9e-15 84.7 61 60.7
Hma1.2p1_0132F.1_g060640 Hydrangea macrophylla HOM05D003518 ORTHO05D005164 3.8e-15 84.3 60 65.0
MD02G1197300 Malus domestica HOM05D003518 ORTHO05D005164 4.9e-15 84.0 60 56.7
Atru.chr5.372 Acer truncatum HOM05D003518 ORTHO05D005164 8.4e-15 83.2 63 57.1
Gohir.A12G102800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 1.1e-14 82.8 61 54.1
Gorai.008G115300 Gossypium raimondii HOM05D003518 ORTHO05D005164 3.2e-14 81.3 61 54.1
Potri.014G074300 Populus trichocarpa HOM05D003518 ORTHO05D005164 3.2e-14 81.3 60 56.7
Ciclev10019439m.g Citrus clementina HOM05D003518 ORTHO05D005164 4.2e-14 80.9 58 55.2
Lsat_1_v5_gn_7_6740 Lactuca sativa HOM05D003518 ORTHO05D005164 4.2e-14 80.9 62 58.1
Sabra02G0120000 Salix brachista HOM05D003518 ORTHO05D005164 4.2e-14 80.9 59 59.3
Glyma.07G080800 Glycine max HOM05D003518 ORTHO05D005164 7.1e-14 80.1 63 55.6
Lalb_Chr04g0256591 Lupinus albus HOM05D003518 ORTHO05D005164 9.3e-14 79.7 56 62.5
Manes.01G263400 Manihot esculenta HOM05D003518 ORTHO05D005164 9.3e-14 79.7 59 57.6
Duzib138G0903 Durio zibethinus HOM05D003518 ORTHO05D005164 1.2e-13 79.3 61 52.5
Lalb_Chr17g0340051 Lupinus albus HOM05D003518 ORTHO05D005164 2.1e-13 78.6 59 59.3
Medtr8g033180 Medicago truncatula HOM05D003518 ORTHO05D005164 2.1e-13 78.6 63 55.6
Cc02_g37010 Coffea canephora HOM05D003518 ORTHO05D005164 2.7e-13 78.2 59 55.9
PGR042G3961 Punica granatum HOM05D003518 ORTHO05D005164 2.7e-13 78.2 56 57.1
TWI59G1247 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 6.0e-13 77.0 60 55.0
VMungo0331G0661 Vigna mungo HOM05D003518 ORTHO05D005164 7.9e-13 76.6 63 52.4
arahy.Tifrunner.gnm1.ann1.4HY23M Arachis hypogaea HOM05D003518 ORTHO05D005164 1.0e-12 76.3 58 55.2
CANSAT56G2265 Cannabis sativa HOM05D003518 ORTHO05D005164 1.0e-12 76.3 60 50.0
ECA236G3950 Erigeron canadensis HOM05D003518 ORTHO05D005164 1.0e-12 76.3 60 55.0
Nn1g01294 Nelumbo nucifera HOM05D003518 ORTHO05D005164 1.0e-12 76.3 58 58.6
QL08p051054 Quercus lobata HOM05D003518 ORTHO05D005164 1.0e-12 76.3 61 54.1
Glyma.03G019200 Glycine max HOM05D003518 ORTHO05D005164 1.3e-12 75.9 63 52.4
Sabra14G0053000 Salix brachista HOM05D003518 ORTHO05D005164 1.3e-12 75.9 57 57.9
Oeu058604.1 Olea europaea HOM05D003518 ORTHO05D005164 1.8e-12 75.5 59 54.2
CiPaw.02G164700 Carya illinoinensis HOM05D003518 ORTHO05D005164 2.3e-12 75.1 61 50.8
Aqoxy7G00493 Aquilegia oxysepala HOM05D003518 ORTHO05D005164 3.0e-12 74.7 60 53.3
Haze_16711 Corylus avellana HOM05D003518 ORTHO05D005164 3.0e-12 74.7 59 52.5
Sed0024132 Sechium edule HOM05D003518 ORTHO05D005164 3.0e-12 74.7 57 56.1
Ah.05g175810 Amaranthus hybridus HOM05D003518 ORTHO05D005164 3.9e-12 74.3 56 51.8
DCAR_006891 Daucus carota HOM05D003518 ORTHO05D005164 3.9e-12 74.3 56 57.1
SGA_v2.0_scaffold153G37052 Striga asiatica HOM05D003518 ORTHO05D005164 3.9e-12 74.3 60 51.7
DCAR_015924 Daucus carota HOM05D003518 ORTHO05D005164 5.1e-12 73.9 57 59.6
MD07G1123700 Malus domestica HOM05D003518 ORTHO05D005164 5.1e-12 73.9 60 50.0
arahy.Tifrunner.gnm1.ann1.N1W82K Arachis hypogaea HOM05D003518 ORTHO05D005164 6.7e-12 73.6 58 53.4
Lj3g0010840 Lotus japonicus HOM05D003518 ORTHO05D005164 6.7e-12 73.6 59 49.2
MBI18_g40306_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D015542 8.7e-12 73.2 59 55.9
TWI14G0835 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 8.7e-12 73.2 60 53.3
Manes.05G041800 Manihot esculenta HOM05D003518 ORTHO05D005164 1.1e-11 72.8 58 51.7
A03p25290 Brassica napus HOM05D003518 ORTHO05D005164 1.5e-11 72.4 56 53.6
THA.LOC104802006 Tarenaya hassleriana HOM05D003518 ORTHO05D005164 1.5e-11 72.4 60 48.3
Ca_23782_v3 Cicer arietinum L. HOM05D003518 ORTHO05D005164 1.9e-11 72.0 63 49.2
CAN.G170.67 Capsicum annuum HOM05D003518 ORTHO05D005164 2.5e-11 71.6 61 52.5
HanXRQChr04g0122151 Helianthus annuus HOM05D003518 ORTHO05D005164 2.5e-11 71.6 66 48.5
MBI11_g05096_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D005164 2.5e-11 71.6 58 55.2
SalBow7G3081 Salvia bowleyana HOM05D003518 ORTHO05D005164 2.5e-11 71.6 59 50.8
BcaC01g05115 Brassica carinata HOM05D003518 ORTHO05D005164 3.3e-11 71.2 56 53.6
C03p30180 Brassica napus HOM05D003518 ORTHO05D005164 3.3e-11 71.2 56 53.6
Nn6g34312 Nelumbo nucifera HOM05D003518 ORTHO05D005164 3.3e-11 71.2 64 48.4
ECA234G2542 Erigeron canadensis HOM05D003518 ORTHO05D005164 4.3e-11 70.9 60 55.0
Eucgr.E01329 Eucalyptus grandis HOM05D003518 ORTHO05D005164 4.3e-11 70.9 58 53.4
HanXRQChr16g0523541 Helianthus annuus HOM05D003518 ORTHO05D005164 4.3e-11 70.9 62 50.0
Phvul.010G088200 Phaseolus vulgaris HOM05D003518 ORTHO05D005164 4.3e-11 70.9 60 53.3
BraA03t11733Z Brassica rapa HOM05D003518 ORTHO05D005164 7.4e-11 70.1 56 51.8
AUR62033382 Chenopodium quinoa HOM05D003518 ORTHO05D005164 7.4e-11 70.1 56 51.8
Gohir.D11G088000 Gossypium hirsutum HOM05D003518 ORTHO05D005164 7.4e-11 70.1 60 45.0
Gorai.007G093900 Gossypium raimondii HOM05D003518 ORTHO05D005164 7.4e-11 70.1 60 45.0
PSO782G5439 Papaver somniferum HOM05D003518 ORTHO05D005164 7.4e-11 70.1 53 56.6
EL10Ac1g00954 Beta vulgaris HOM05D003518 ORTHO05D005164 9.6e-11 69.7 56 51.8
BolC3t15366H Brassica oleracea HOM05D003518 ORTHO05D005164 9.6e-11 69.7 56 53.6
Sopen01g037730 Solanum pennellii HOM05D003518 ORTHO05D005164 9.6e-11 69.7 59 52.5
BcaB01g03262 Brassica carinata HOM05D003518 ORTHO05D005164 1.3e-10 69.3 53 52.8
AUR62004275 Chenopodium quinoa HOM05D003518 ORTHO05D005164 1.6e-10 68.9 56 51.8
Lsat_1_v5_gn_4_37220 Lactuca sativa HOM05D003518 ORTHO05D005164 1.6e-10 68.9 60 50.0
PSO478G4904 Papaver somniferum HOM05D003518 ORTHO05D005164 1.6e-10 68.9 53 56.6
CsaV3_3G009390 Cucumis sativus L. HOM05D003518 ORTHO05D005164 2.1e-10 68.6 57 52.6
Migut.B01669 Erythranthe guttata HOM05D003518 ORTHO05D005164 2.1e-10 68.6 58 44.8
Sc23g0003400 Simmondsia chinensis HOM05D003518 ORTHO05D005164 2.1e-10 68.6 54 53.7
Solyc01g091950.4 Solanum lycopersicum HOM05D003518 ORTHO05D005164 2.1e-10 68.6 59 50.8
ClCG05G001980 Citrullus lanatus HOM05D003518 ORTHO05D005164 2.8e-10 68.2 57 54.4
HanXRQChr06g0169291 Helianthus annuus HOM05D003518 ORTHO05D005164 2.8e-10 68.2 66 47.0
Oeu024431.2 Olea europaea HOM05D003518 ORTHO05D005164 4.8e-10 67.4 59 54.2
Cpa.g.sc18.167 Carica papaya HOM05D003518 ORTHO05D005164 6.2e-10 67.0 59 45.8
BcaB06g29432 Brassica carinata HOM05D003518 ORTHO05D005164 8.2e-10 66.6 56 51.8
A04p33950 Brassica napus HOM05D003518 ORTHO05D005164 8.2e-10 66.6 56 51.8
BraA04t18856Z Brassica rapa HOM05D003518 ORTHO05D005164 8.2e-10 66.6 56 51.8
MELO3C006158.2 Cucumis melo HOM05D003518 ORTHO05D005164 8.2e-10 66.6 57 50.9
Sed0008201 Sechium edule HOM05D003518 ORTHO05D005164 3.1e-09 64.7 57 49.1
arahy.Tifrunner.gnm1.ann1.I486B7 Arachis hypogaea HOM05D003518 ORTHO05D005164 4.0e-09 64.3 49 55.1
arahy.Tifrunner.gnm1.ann1.UCSC4W Arachis hypogaea HOM05D003518 ORTHO05D005164 4.0e-09 64.3 49 55.1
MSTRG.20781 Avicennia marina HOM05D003518 ORTHO05D005164 5.3e-09 63.9 60 46.7
AL4G44840 Arabidopsis lyrata HOM05D003518 ORTHO05D005164 6.9e-09 63.5 56 44.6
CARHR140890 Cardamine hirsuta HOM05D003518 ORTHO05D005164 6.9e-09 63.5 53 47.2
Aa31LG1G27140 Aethionema arabicum HOM05D003518 ORTHO05D005164 9.0e-09 63.2 55 43.6
CSS0013582 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 1.2e-08 62.8 38 76.3
BcaC02g07077 Brassica carinata HOM05D003518 ORTHO05D005164 2.0e-08 62.0 56 46.4
C04p71760 Brassica napus HOM05D003518 ORTHO05D005164 2.0e-08 62.0 56 46.4
Sp4g27710 Schrenkiella parvula HOM05D003518 ORTHO05D005164 2.0e-08 62.0 56 44.6
Thhalv10001388m.g Eutrema salsugineum HOM05D003518 ORTHO05D005164 3.4e-08 61.2 57 42.1
Nitab4.5_0003182g0050 Nicotiana tabacum HOM05D003518 ORTHO05D005164 1.0e-07 59.7 45 62.2
Carub.0004s2832 Capsella rubella HOM05D003518 ORTHO05D005164 1.7e-07 58.9 53 41.5
BolC4t28675H Brassica oleracea HOM05D003518 ORTHO05D005164 1.9e-06 55.5 56 42.9
Hund16973 Selenicereus undatus HOM05D003518 ORTHO05D005164 5.5e-06 53.9 55 38.2
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 7.1e-06 53.5 54 46.3
HPP92_012965 Vanilla planifolia HOM05D003518 ORTHO05D015542 9.3e-06 53.1 49 46.9


User provided reference genes

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