Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043693 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D002507 1.7e-105 386.0 183 100.0
SGA_v2.0_scaffold47G17804 Striga asiatica HOM05D003130 ORTHO05D003547 1.3e-17 94.0 100 42.0
CiPaw.11G186100 Carya illinoinensis HOM05D000040 ORTHO05D002507 2.7e-15 86.3 96 44.8
SGA_v2.0_scaffold130G34281 Striga asiatica HOM05D000040 ORTHO05D002507 1.3e-14 84.0 153 33.3
Thecc.07G045700 Theobroma cacao HOM05D000040 ORTHO05D002507 5.1e-14 82.0 184 32.6
Ciclev10008293m.g Citrus clementina HOM05D000040 ORTHO05D002507 1.5e-13 80.5 173 32.4
Prupe.4G207700 Prunus persica HOM05D000040 ORTHO05D002507 1.5e-13 80.5 97 46.4
Prupe.4G207600 Prunus persica HOM05D000040 ORTHO05D002507 2.5e-13 79.7 97 42.3
Nn1g07070 Nelumbo nucifera HOM05D000040 ORTHO05D002507 4.3e-13 79.0 186 32.8
Nn1g07071 Nelumbo nucifera HOM05D000040 ORTHO05D002507 4.3e-13 79.0 189 31.2
Migut.H02008 Erythranthe guttata HOM05D000040 ORTHO05D002507 5.7e-13 78.6 110 47.3
TAR629G1925 Trochodendron aralioides HOM05D000040 ORTHO05D002507 5.7e-13 78.6 118 35.6
CiPaw.11G186000 Carya illinoinensis HOM05D000040 ORTHO05D002507 9.7e-13 77.8 98 44.9
SGA_v2.0_scaffold130G34277 Striga asiatica HOM05D000040 ORTHO05D002507 9.7e-13 77.8 90 41.1
Ciclev10010659m.g Citrus clementina HOM05D000040 ORTHO05D002507 1.6e-12 77.0 178 32.6
Duzib170G0803 Durio zibethinus HOM05D000040 ORTHO05D002507 2.2e-12 76.6 97 40.2
Thecc.07G045900 Theobroma cacao HOM05D000040 ORTHO05D002507 4.8e-12 75.5 96 41.7
SGA_v2.0_scaffold130G34284 Striga asiatica HOM05D000040 ORTHO05D002507 8.2e-12 74.7 159 35.8
Duzib170G0476 Durio zibethinus HOM05D000040 ORTHO05D002507 1.1e-11 74.3 96 39.6
CiPaw.11G186200 Carya illinoinensis HOM05D000040 ORTHO05D002507 1.4e-11 73.9 183 32.8
RcHm_v2.0_Chr4g0399441 Rosa chinensis HOM05D000040 ORTHO05D002507 1.8e-11 73.6 181 32.6
Ciclev10010738m.g Citrus clementina HOM05D000040 ORTHO05D002507 3.1e-11 72.8 97 44.3
Haze_09639 Corylus avellana HOM05D000040 ORTHO05D002507 9.0e-11 71.2 179 32.4
MD11G1223600 Malus domestica HOM05D000040 ORTHO05D002507 2.0e-10 70.1 97 40.2
Duzib213G0809 Durio zibethinus HOM05D000040 ORTHO05D002507 2.6e-10 69.7 97 40.2
Migut.M00594 Erythranthe guttata HOM05D000040 ORTHO05D002507 4.5e-10 68.9 109 34.9
Gorai.002G086300 Gossypium raimondii HOM05D000040 ORTHO05D002507 4.5e-10 68.9 98 39.8
Atru.chr2.3252 Acer truncatum HOM05D000040 ORTHO05D002507 5.9e-10 68.6 124 38.7
Ciclev10008284m.g Citrus clementina HOM05D000040 ORTHO05D002507 2.9e-09 66.2 96 40.6
COL.COLO4_09610 Corchorus olitorius HOM05D000040 ORTHO05D002507 3.8e-09 65.9 99 40.4
COL.COLO4_09611 Corchorus olitorius HOM05D000040 ORTHO05D002507 3.8e-09 65.9 97 38.1
PGR083G0257 Punica granatum HOM05D000040 ORTHO05D002507 3.8e-09 65.9 109 34.9
COL.COLO4_18985 Corchorus olitorius HOM05D000040 ORTHO05D001305 5.0e-09 65.5 162 29.0
COL.COLO4_09609 Corchorus olitorius HOM05D000040 ORTHO05D002507 8.5e-09 64.7 99 39.4
Migut.M00588 Erythranthe guttata HOM05D000040 ORTHO05D002507 1.1e-08 64.3 91 35.2
Migut.M00593 Erythranthe guttata HOM05D000040 ORTHO05D002507 1.1e-08 64.3 86 37.2
PSO339G6518 Papaver somniferum HOM05D000040 ORTHO05D002507 1.1e-08 64.3 184 28.8
QL02p018408 Quercus lobata HOM05D000040 ORTHO05D001305 1.1e-08 64.3 105 37.1
PGR083G1442 Punica granatum HOM05D000040 ORTHO05D002507 2.5e-08 63.2 109 34.9
QL02p018341 Quercus lobata HOM05D000040 ORTHO05D001305 2.5e-08 63.2 105 37.1
Atru.chr2.2709 Acer truncatum HOM05D000040 ORTHO05D002507 3.2e-08 62.8 178 30.9
Migut.M00591 Erythranthe guttata HOM05D000040 ORTHO05D002507 3.2e-08 62.8 197 28.4
Rhsim02G0218300 Rhododendron simsii HOM05D000040 ORTHO05D001305 3.2e-08 62.8 106 34.9
Rhsim02G0218800 Rhododendron simsii HOM05D000040 ORTHO05D001305 3.2e-08 62.8 106 34.9
Eucgr.G01690 Eucalyptus grandis HOM05D000040 ORTHO05D001305 9.4e-08 61.2 163 28.2
Gohir.D13G144700 Gossypium hirsutum HOM05D000040 ORTHO05D002507 9.4e-08 61.2 95 35.8
Potri.018G014500 Populus trichocarpa HOM05D000040 ORTHO05D001305 9.4e-08 61.2 165 27.9
Gohir.A13G139800 Gossypium hirsutum HOM05D000040 ORTHO05D002507 1.2e-07 60.8 96 34.4
Glyma.08G321400 Glycine max HOM05D000040 ORTHO05D001305 1.6e-07 60.5 160 28.1
Gohir.D13G144900 Gossypium hirsutum HOM05D000040 ORTHO05D002507 1.6e-07 60.5 96 34.4
Gorai.013G162500 Gossypium raimondii HOM05D000040 ORTHO05D002507 1.6e-07 60.5 96 34.4
Medtr3g053980 Medicago truncatula HOM05D000040 ORTHO05D001305 1.6e-07 60.5 165 29.1
PSO767G0003 Papaver somniferum HOM05D000040 ORTHO05D002507 1.6e-07 60.5 185 28.6
Atru.chr1.3310 Acer truncatum HOM05D000040 ORTHO05D001305 2.1e-07 60.1 167 28.7
Ciclev10008143m.g Citrus clementina HOM05D000040 ORTHO05D001305 2.1e-07 60.1 95 35.8
Gorai.013G162100 Gossypium raimondii HOM05D000040 ORTHO05D002507 2.1e-07 60.1 95 35.8
vmacro00826 Vaccinium macrocarpon HOM05D000040 ORTHO05D000267 2.7e-07 59.7 190 28.9
SalBow4G1664 Salvia bowleyana HOM05D000040 ORTHO05D001305 3.6e-07 59.3 93 35.5
Atru.chr6.2119 Acer truncatum HOM05D000040 ORTHO05D000267 4.6e-07 58.9 165 29.7
Glyma.08G321200 Glycine max HOM05D000040 ORTHO05D001305 4.6e-07 58.9 163 30.1
Manes.03G006500 Manihot esculenta HOM05D000040 ORTHO05D001305 4.6e-07 58.9 100 36.0
QL02p018304 Quercus lobata HOM05D000040 ORTHO05D001305 4.6e-07 58.9 105 36.2
Sopen08g021060 Solanum pennellii HOM05D000040 ORTHO05D001305 4.6e-07 58.9 93 36.6
Atru.chr7.2590 Acer truncatum HOM05D000040 ORTHO05D001305 6.1e-07 58.5 172 29.7
Migut.M00595 Erythranthe guttata HOM05D000040 ORTHO05D002507 7.9e-07 58.2 90 33.3
MD15G1044000 Malus domestica HOM05D000040 ORTHO05D001305 7.9e-07 58.2 104 34.6
Manes.16G132600 Manihot esculenta HOM05D000040 ORTHO05D001305 7.9e-07 58.2 99 37.4
QL02p018140 Quercus lobata HOM05D000040 ORTHO05D001305 7.9e-07 58.2 105 34.3
TAR369G1147 Trochodendron aralioides HOM05D000040 ORTHO05D002507 7.9e-07 58.2 207 28.5
Atru.chr2.2706 Acer truncatum HOM05D000040 ORTHO05D002507 1.0e-06 57.8 107 33.6
Gohir.D05G064300 Gossypium hirsutum HOM05D000040 ORTHO05D001305 1.0e-06 57.8 166 28.3
PGSC0003DMG400023144 Solanum tuberosum HOM05D000040 ORTHO05D001305 1.0e-06 57.8 105 34.3
MSTRG.25820 Avicennia marina HOM05D000040 ORTHO05D001305 1.4e-06 57.4 92 35.9
Migut.M00596 Erythranthe guttata HOM05D000040 ORTHO05D002507 1.4e-06 57.4 90 33.3
Gorai.009G065000 Gossypium raimondii HOM05D000040 ORTHO05D001305 1.4e-06 57.4 166 28.3
HanXRQChr09g0248241 Helianthus annuus HOM05D000040 ORTHO05D001305 1.4e-06 57.4 105 36.2
MBI14_g11786_MAGBIO Magnolia biondii HOM05D000040 ORTHO05D001305 1.4e-06 57.4 107 36.4
QL02p018176 Quercus lobata HOM05D000040 ORTHO05D001305 1.4e-06 57.4 92 37.0
Rhsim02G0219400 Rhododendron simsii HOM05D000040 ORTHO05D001305 1.4e-06 57.4 93 36.6
SEGI_10756 Sequoiadendron giganteum HOM05D000040 ORTHO05D000267 1.4e-06 57.4 147 31.3
AUR62027889 Chenopodium quinoa HOM05D000040 ORTHO05D000267 1.8e-06 57.0 117 36.8
Nitab4.5_0000151g0140 Nicotiana tabacum HOM05D000040 ORTHO05D001305 1.8e-06 57.0 90 36.7
GSVIVG01036013001 Vitis vinifera HOM05D000040 ORTHO05D001305 1.8e-06 57.0 102 36.3
Hma1.2p1_0103F.1_g049865 Hydrangea macrophylla HOM05D000040 ORTHO05D001305 2.3e-06 56.6 162 28.4
Hma1.2p1_0977F.1_g243300 Hydrangea macrophylla HOM05D000040 ORTHO05D001305 2.3e-06 56.6 162 28.4
Nitab4.5_0006944g0010 Nicotiana tabacum HOM05D000040 ORTHO05D001305 2.3e-06 56.6 90 35.6
PGR044G1244 Punica granatum HOM05D000040 ORTHO05D001305 2.3e-06 56.6 104 35.6
QL02p018253 Quercus lobata HOM05D000040 ORTHO05D001305 2.3e-06 56.6 92 35.9
Solyc08g067100.2 Solanum lycopersicum HOM05D000040 ORTHO05D001305 2.3e-06 56.6 90 36.7
TPR.G32255 Trifolium pratense HOM05D000040 ORTHO05D001305 2.3e-06 56.6 161 27.3
EL10Ac1g01048 Beta vulgaris HOM05D000040 ORTHO05D000267 3.0e-06 56.2 94 41.5
EL10Ac6g13645 Beta vulgaris HOM05D000040 ORTHO05D000267 3.0e-06 56.2 106 34.9
MBI14_g11784_MAGBIO Magnolia biondii HOM05D000040 ORTHO05D001305 3.0e-06 56.2 158 29.1
Peaxi162Scf00045g01234 Petunia axillaris HOM05D000040 ORTHO05D000267 3.0e-06 56.2 174 25.3
Atru.chr2.2659 Acer truncatum HOM05D000040 ORTHO05D002507 3.9e-06 55.8 96 35.4
Actinidia05114 Actinidia chinensis HOM05D000040 ORTHO05D002507 3.9e-06 55.8 117 30.8
Eucgr.C04028 Eucalyptus grandis HOM05D000040 ORTHO05D001305 3.9e-06 55.8 104 35.6
Cpa.g.sc40.16 Carica papaya HOM05D000040 ORTHO05D001305 5.1e-06 55.5 95 35.8
Nitab4.5_0026734g0010 Nicotiana tabacum HOM05D000040 ORTHO05D000267 5.1e-06 55.5 91 35.2
RcHm_v2.0_Chr4g0402551 Rosa chinensis HOM05D000040 ORTHO05D001305 5.1e-06 55.5 127 29.9
SEGI_15251 Sequoiadendron giganteum HOM05D000040 ORTHO05D000267 5.1e-06 55.5 157 30.6
SEGI_37030 Sequoiadendron giganteum HOM05D000040 ORTHO05D000267 5.1e-06 55.5 163 29.4
ATR0580G011 Amborella trichopoda HOM05D000040 ORTHO05D007667 6.7e-06 55.1 90 36.7
CSS0041771 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D001305 6.7e-06 55.1 103 34.0
Eucgr.C01882 Eucalyptus grandis HOM05D000040 ORTHO05D001305 6.7e-06 55.1 105 32.4
Eucgr.G01376 Eucalyptus grandis HOM05D000040 ORTHO05D001305 6.7e-06 55.1 103 34.0
MD08G1050900 Malus domestica HOM05D000040 ORTHO05D001305 6.7e-06 55.1 105 33.3
Nitab4.5_0000063g0370 Nicotiana tabacum HOM05D000040 ORTHO05D000267 8.8e-06 54.7 92 35.9
Nitab4.5_0000063g0380 Nicotiana tabacum HOM05D000040 ORTHO05D000267 8.8e-06 54.7 92 35.9


User provided reference genes

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