Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 0.0e+00 1463.0 782 100.0
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 3.1e-302 1041.6 733 72.9
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 2.2e-300 1035.4 724 72.1
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.3e-281 972.2 740 68.0
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 9.1e-278 960.3 737 67.2
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.7e-274 948.7 725 67.2
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 1.8e-273 946.0 739 66.0
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 5.2e-273 944.5 732 66.8
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 9.7e-272 940.3 735 67.1
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.1e-270 936.8 739 65.6
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 1.0e-268 930.2 729 64.7
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 2.2e-268 929.1 741 64.9
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 3.6e-266 921.8 732 64.9
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 3.7e-263 911.8 729 64.7
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 3.7e-263 911.8 742 63.5
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 9.1e-262 907.1 731 64.7
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 4.5e-261 904.8 726 65.3
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 1.0e-260 903.7 734 64.0
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 6.5e-260 901.0 734 63.5
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.1e-259 900.2 729 63.1
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 7.2e-259 897.5 724 66.3
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 8.0e-258 894.0 743 62.3
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 1.0e-257 893.6 725 62.6
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.2e-256 890.2 730 63.3
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 5.7e-256 887.9 738 63.1
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 7.5e-256 887.5 733 62.8
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 8.3e-255 884.0 738 63.6
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 5.4e-254 881.3 726 64.2
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 7.0e-254 880.9 726 62.5
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 2.7e-253 879.0 739 62.2
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 8.6e-252 874.0 729 62.0
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 4.3e-251 871.7 747 61.6
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.2e-250 870.2 747 61.4
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.6e-250 869.8 747 61.3
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 8.0e-250 867.5 747 61.3
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.0e-249 867.1 731 62.0
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 1.4e-249 866.7 732 62.6
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.8e-249 866.3 730 61.8
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 3.0e-249 865.5 730 61.6
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 2.6e-248 862.4 727 61.9
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 2.6e-248 862.4 729 61.3
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.2e-247 859.4 730 61.2
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 2.9e-247 859.0 741 59.9
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 2.9e-247 859.0 727 60.7
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 8.3e-247 857.4 731 62.2
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 2.4e-246 855.9 734 60.8
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 4.1e-246 855.1 737 60.5
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 7.0e-246 854.4 736 60.6
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 7.0e-246 854.4 754 58.6
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 3.5e-245 852.0 726 60.5
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 2.3e-244 849.4 736 60.6
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 3.9e-244 848.6 729 59.4
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 1.5e-243 846.7 728 61.0
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 4.3e-243 845.1 734 59.5
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 7.3e-243 844.3 733 61.9
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 1.2e-242 843.6 728 62.5
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 6.2e-242 841.3 729 60.4
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 2.3e-241 839.3 728 62.1
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 5.2e-241 838.2 727 59.6
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 2.6e-240 835.9 741 59.8
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 9.8e-240 833.9 723 58.9
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 8.3e-239 830.9 722 58.4
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.9e-238 829.7 726 59.0
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 4.1e-238 828.6 721 58.8
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 9.2e-238 827.4 737 59.7
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 3.5e-237 825.5 735 58.8
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 8.6e-236 820.8 730 57.8
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 1.2e-234 817.0 729 59.7
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 2.8e-234 815.8 738 56.0
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 3.6e-234 815.5 726 59.2
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 3.6e-234 815.5 733 60.4
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 4.7e-234 815.1 726 59.0
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 4.7e-234 815.1 735 58.2
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 8.1e-234 814.3 729 58.6
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 1.1e-233 813.9 734 59.0
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.4e-233 813.5 732 58.7
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 1.8e-233 813.1 723 57.7
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 2.3e-233 812.8 742 57.8
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 4.0e-233 812.0 730 58.4
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 1.5e-232 810.1 726 58.8
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 2.0e-232 809.7 722 56.8
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 7.5e-232 807.7 753 57.1
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 9.9e-232 807.4 733 58.3
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 1.3e-231 807.0 733 58.4
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 2.9e-231 805.8 723 58.1
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 1.1e-230 803.9 727 58.5
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 1.1e-230 803.9 727 58.5
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 1.1e-230 803.9 727 58.5
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 1.4e-230 803.5 733 57.2
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 2.4e-230 802.7 738 57.9
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 3.2e-230 802.4 711 57.9
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 1.2e-229 800.4 732 57.7
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 1.2e-229 800.4 739 57.8
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.2e-229 800.4 729 59.7
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 1.2e-229 800.4 734 58.3
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 6.0e-229 798.1 737 57.7
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 7.8e-229 797.7 753 56.8
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 1.7e-228 796.6 729 57.1
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 6.6e-228 794.7 731 57.0
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 4.3e-227 792.0 717 57.0
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 5.2e-225 785.0 715 56.8
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 5.8e-224 781.6 734 57.4
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 9.9e-224 780.8 724 55.8
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 9.2e-222 774.2 732 57.7
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 4.6e-221 771.9 737 57.0
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 1.9e-219 766.5 741 54.9
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 2.8e-218 762.7 764 54.8
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.7e-218 761.9 705 56.5
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 6.2e-218 761.5 733 56.5
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.4e-217 760.4 744 55.4
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 2.1e-213 746.5 582 65.3
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 6.6e-212 741.5 720 54.9
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 1.1e-209 734.2 732 55.6
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 2.2e-207 726.5 723 54.6
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 5.6e-203 711.8 716 52.7
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 7.4e-203 711.4 716 52.5
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 8.4e-199 698.0 731 54.2
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.3e-195 686.0 693 52.8
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 1.7e-191 673.7 730 50.8
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 3.5e-189 666.0 729 52.4
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.0e-188 664.5 592 58.1
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 5.1e-188 662.1 728 51.6
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.4e-185 654.1 714 52.0
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 9.4e-182 641.3 729 48.1
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 3.8e-175 619.4 507 65.3
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 5.0e-175 619.0 716 48.2
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 5.0e-175 619.0 841 43.3
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 6.3e-162 575.5 748 44.5
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 2.0e-160 570.5 765 43.5
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 5.0e-159 565.8 748 44.1
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 1.3e-154 551.2 535 54.2
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 2.2e-151 540.4 756 44.0
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 2.5e-150 537.0 582 50.5
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 5.4e-145 519.2 811 39.6
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 4.5e-144 516.2 743 41.2
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 8.0e-125 452.2 338 67.2
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 1.9e-113 414.5 377 57.6
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 2.1e-112 411.0 369 59.3
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 5.1e-111 406.4 364 58.8
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 6.8e-108 396.0 313 60.7
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 5.1e-95 353.2 464 46.6
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 2.8e-93 347.4 407 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 3.1e-92 344.0 921 29.2
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 1.2e-91 342.0 207 78.7
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 3.1e-68 264.2 439 39.4
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.0e-66 259.2 429 38.5
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 7.2e-57 226.5 177 65.0
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.7e-45 187.6 191 54.5
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 2.0e-43 181.8 147 57.8
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 1.5e-41 175.6 120 63.3
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 9.8e-38 162.9 99 76.8
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 4.2e-33 147.5 211 40.3
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 6.1e-24 117.1 82 69.5
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 1.0e-23 116.3 78 70.5
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 1.5e-22 112.5 113 58.4
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 4.4e-22 110.9 77 66.2
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.4e-20 105.9 113 50.4
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 4.1e-20 104.4 95 61.1
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 9.2e-20 103.2 103 48.5
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 9.2e-20 103.2 103 48.5
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 3.5e-19 101.3 74 62.2
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 5.6e-17 94.0 75 58.7
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 5.6e-17 94.0 75 58.7
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 7.3e-17 93.6 430 24.7
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 8.0e-16 90.1 101 44.6
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 2.4e-12 78.6 64 64.1
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 1.6e-11 75.9 182 30.8
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 2.7e-11 75.1 80 52.5
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 6.0e-11 73.9 59 61.0
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 2.3e-10 72.0 68 54.4
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 3.9e-10 71.2 75 46.7
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 8.6e-10 70.1 243 29.2
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 7.3e-09 67.0 59 55.9
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 7.3e-09 67.0 48 66.7
CDE02G3796 Ceratophyllum demersum HOM05D001905 ORTHO05D001820 8.1e-08 63.5 427 26.0
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.2e-06 59.7 76 43.4
ECA233G4656 Erigeron canadensis HOM05D002503 ORTHO05D002810 5.8e-06 57.4 473 23.7


User provided reference genes

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