Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 1.5e-34 149.1 81 100.0
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 1.5e-18 95.9 61 77.0
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 2.6e-18 95.1 61 75.4
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 3.4e-18 94.7 57 77.2
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 3.2e-16 88.2 82 57.3
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 5.4e-16 87.4 64 68.8
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.7e-15 85.1 64 65.6
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 4.6e-15 84.3 60 70.0
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 4.6e-15 84.3 63 66.7
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 4.6e-15 84.3 44 86.4
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 4.6e-15 84.3 44 86.4
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.0e-14 83.2 63 66.7
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 1.0e-14 83.2 64 57.8
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.3e-14 82.8 64 60.9
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 1.3e-14 82.8 46 80.4
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.7e-14 82.4 83 54.2
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.7e-14 82.4 61 65.6
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.7e-14 82.4 63 63.5
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 3.9e-14 81.3 46 78.3
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 3.9e-14 81.3 46 78.3
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 5.0e-14 80.9 47 72.3
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 5.0e-14 80.9 63 65.1
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 5.0e-14 80.9 63 65.1
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 5.0e-14 80.9 63 60.3
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.1e-13 79.7 63 63.5
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 1.1e-13 79.7 66 59.1
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 1.9e-13 79.0 63 61.9
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 4.3e-13 77.8 61 67.2
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 4.3e-13 77.8 63 60.3
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 9.5e-13 76.6 63 60.3
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 9.5e-13 76.6 60 61.7
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 9.5e-13 76.6 60 66.7
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 9.5e-13 76.6 47 72.3
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 1.6e-12 75.9 62 61.3
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 1.6e-12 75.9 60 61.7
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.6e-12 75.9 58 58.6
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 1.6e-12 75.9 58 63.8
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 1.6e-12 75.9 63 63.5
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 1.6e-12 75.9 62 64.5
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 2.1e-12 75.5 68 54.4
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 3.6e-12 74.7 61 60.7
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 4.7e-12 74.3 64 60.9
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 4.7e-12 74.3 61 59.0
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 6.2e-12 73.9 67 56.7
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 8.1e-12 73.6 60 58.3
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 1.1e-11 73.2 44 72.7
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.8e-11 72.4 64 54.7
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 1.8e-11 72.4 61 60.7
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 1.8e-11 72.4 61 57.4
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 3.1e-11 71.6 62 61.3
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.1e-11 71.6 62 61.3
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.1e-11 71.6 62 61.3
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 3.1e-11 71.6 62 61.3
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 3.1e-11 71.6 58 60.3
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 4.0e-11 71.2 48 70.8
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 6.8e-11 70.5 62 59.7
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 6.8e-11 70.5 58 65.5
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 6.8e-11 70.5 45 68.9
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 8.9e-11 70.1 64 51.6
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 1.5e-10 69.3 55 58.2
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 2.6e-10 68.6 65 55.4
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 3.4e-10 68.2 57 57.9
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 3.4e-10 68.2 58 58.6
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 4.4e-10 67.8 46 67.4
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 4.4e-10 67.8 46 67.4
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 4.4e-10 67.8 46 67.4
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 4.4e-10 67.8 56 64.3
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 5.8e-10 67.4 49 61.2
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 1.3e-09 66.2 45 66.7
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 1.3e-09 66.2 49 61.2
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 1.7e-09 65.9 62 54.8
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 1.7e-09 65.9 46 63.0
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 1.7e-09 65.9 46 63.0
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 2.9e-09 65.1 46 63.0
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.9e-09 65.1 46 63.0
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 3.7e-09 64.7 46 63.0
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 3.7e-09 64.7 46 63.0
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 3.7e-09 64.7 46 63.0
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 1.9e-08 62.4 43 65.1
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 2.4e-08 62.0 46 63.0
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 3.2e-08 61.6 44 63.6
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 7.1e-08 60.5 52 53.8
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 7.1e-08 60.5 44 63.6
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 7.1e-08 60.5 34 76.5
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 2.3e-06 55.5 34 64.7
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 6.6e-06 53.9 41 53.7


User provided reference genes

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