Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.9e-73 278.9 184 100.0
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.6e-63 246.5 183 91.8
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.2e-31 140.6 156 66.0
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.7e-31 139.4 156 66.0
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 9.1e-19 97.8 141 55.3
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.6e-18 96.3 141 54.6
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 7.7e-18 94.7 150 55.3
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 1.3e-17 94.0 150 58.7
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.1e-16 90.9 135 59.3
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 3.2e-16 89.4 148 56.1
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 9.4e-16 87.8 141 42.6
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 6.1e-15 85.1 152 49.3
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 2.3e-14 83.2 146 47.3
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 6.7e-14 81.6 144 50.7
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 1.1e-13 80.9 152 52.6
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 1.1e-13 80.9 152 52.6
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 2.0e-13 80.1 154 55.2
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 4.4e-13 79.0 152 57.9
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 4.4e-13 79.0 143 56.6
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.3e-12 77.4 162 54.9
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 3.7e-12 75.9 139 38.1
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 8.2e-12 74.7 145 49.7
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 1.4e-11 73.9 138 55.1
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 1.8e-11 73.6 146 54.1
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 3.1e-11 72.8 161 45.3
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.3e-11 72.0 153 43.1
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 9.1e-11 71.2 154 51.3
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 9.1e-11 71.2 148 48.0
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 3.5e-10 69.3 150 53.3
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 1.3e-09 67.4 170 51.2
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.7e-09 67.0 168 44.6
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 1.7e-09 67.0 131 51.1
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 1.1e-08 64.3 150 44.0
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 3.2e-08 62.8 133 43.6
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.2e-07 60.8 152 50.0
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 1.6e-07 60.5 137 32.8
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 2.1e-07 60.1 138 32.6
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 2.7e-07 59.7 134 54.5
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 3.6e-07 59.3 144 32.6
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 4.7e-07 58.9 161 40.4
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 6.1e-07 58.5 138 33.3
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 8.0e-07 58.2 152 38.2
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 1.0e-06 57.8 137 36.5
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 1.0e-06 57.8 134 49.3
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.4e-06 57.4 133 53.4
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.4e-06 57.4 137 34.3
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.8e-06 57.0 136 52.9
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 2.3e-06 56.6 140 42.9
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 3.0e-06 56.2 136 30.9
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 3.0e-06 56.2 158 37.3
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 5.2e-06 55.5 143 35.7
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 5.2e-06 55.5 110 57.3
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 5.2e-06 55.5 152 36.2
PGSC0003DMG400017769 Solanum tuberosum HOM05D059644 ORTHO05D004477 6.7e-06 55.1 152 57.2
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 8.8e-06 54.7 143 32.9


User provided reference genes

Program Settings