Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.8e-167 590.1 309 100.0
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 4.1e-149 531.6 309 88.7
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 6.2e-145 517.7 309 84.1
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.8e-143 511.1 319 85.0
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.7e-142 509.6 301 86.0
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.7e-142 508.4 309 82.8
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 4.9e-142 508.1 301 85.4
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 8.3e-142 507.3 299 85.6
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 8.3e-142 507.3 308 82.1
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 8.3e-142 507.3 309 82.5
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 9.2e-141 503.8 307 83.1
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.1e-140 502.7 310 82.3
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.0e-139 500.4 310 82.3
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 2.3e-139 499.2 309 80.6
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.9e-139 498.4 304 86.2
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.9e-139 498.4 259 100.0
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.5e-138 496.5 309 79.6
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.9e-138 496.1 312 81.7
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.5e-138 495.7 309 79.3
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 3.3e-138 495.4 309 79.6
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 7.3e-138 494.2 309 79.9
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.8e-137 492.3 309 79.9
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.8e-136 489.6 303 80.2
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-136 489.2 309 79.0
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.3e-136 489.2 309 82.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 4.0e-136 488.4 309 79.9
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.0e-136 488.4 313 80.5
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 4.0e-136 488.4 312 79.2
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.5e-135 486.5 309 78.0
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.5e-135 486.5 313 80.8
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.6e-135 485.7 310 79.7
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.4e-135 485.0 309 78.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.6e-135 484.2 309 78.6
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.7e-134 483.0 309 78.3
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.2e-134 482.6 309 78.3
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 4.9e-134 481.5 309 76.4
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 8.3e-134 480.7 312 77.2
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.4e-133 479.9 309 75.7
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.2e-132 476.9 301 80.4
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.2e-132 476.9 309 79.0
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.6e-132 476.5 309 77.3
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.6e-132 476.5 309 77.3
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.6e-132 476.5 311 78.5
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.6e-132 476.5 309 77.7
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.1e-132 476.1 300 80.7
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 6.0e-132 474.6 346 72.8
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-131 473.8 312 77.2
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.0e-131 473.8 297 81.1
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.7e-131 473.0 312 76.9
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 3.0e-131 472.2 311 76.5
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.0e-131 472.2 300 80.0
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.6e-131 471.1 309 76.4
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 8.6e-131 470.7 300 79.0
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.9e-130 469.5 309 73.8
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 4.3e-130 468.4 309 77.0
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.3e-130 468.4 309 77.3
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 5.6e-130 468.0 344 72.4
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 7.3e-130 467.6 312 76.9
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 7.3e-130 467.6 311 75.9
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 3.6e-129 465.3 310 76.1
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 8.1e-129 464.2 306 77.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.8e-128 463.0 305 76.1
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.4e-128 462.6 309 77.0
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 4.4e-127 458.4 309 76.1
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 5.8e-127 458.0 313 76.0
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 7.6e-127 457.6 309 76.4
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.9e-126 455.7 315 75.2
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 3.8e-126 455.3 310 74.2
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.9e-125 453.0 297 78.1
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.9e-125 453.0 313 74.4
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.4e-125 452.6 303 74.9
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 3.2e-125 452.2 340 71.2
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 7.1e-125 451.1 309 72.2
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.2e-124 450.3 310 75.5
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.6e-124 449.9 390 62.1
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 7.8e-124 447.6 311 74.0
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 7.8e-124 447.6 309 74.1
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.3e-123 446.0 301 76.4
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.0e-123 445.7 307 73.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.5e-122 442.6 301 75.7
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 5.6e-122 441.4 350 64.6
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.6e-122 441.4 299 74.2
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 7.3e-122 441.0 309 72.5
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.3e-121 440.3 275 78.9
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.6e-121 439.9 309 71.2
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.1e-121 439.5 309 72.5
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 3.6e-121 438.7 309 71.8
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 6.2e-121 438.0 318 72.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 8.1e-121 437.6 309 71.5
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 8.1e-121 437.6 309 72.2
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.1e-120 437.2 310 72.3
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.4e-120 436.8 304 72.7
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.8e-120 436.4 309 72.2
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.1e-120 435.6 302 72.2
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.0e-120 435.3 307 73.0
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 5.3e-120 434.9 309 72.2
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 6.9e-120 434.5 307 72.6
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 6.9e-120 434.5 304 72.7
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 6.9e-120 434.5 296 73.6
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 9.0e-120 434.1 297 73.1
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.2e-119 433.7 309 71.2
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.5e-119 433.3 309 71.5
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.5e-119 433.3 309 72.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.6e-119 432.6 304 72.7
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.4e-119 432.2 309 71.2
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.8e-119 431.4 314 71.0
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 7.6e-119 431.0 306 74.5
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-118 429.9 309 71.5
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 6.4e-118 427.9 347 64.8
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 6.4e-118 427.9 266 78.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 6.4e-118 427.9 315 70.5
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 6.4e-118 427.9 291 73.5
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.4e-118 427.6 308 71.4
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 2.4e-117 426.0 291 73.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 5.4e-117 424.9 297 71.4
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 2.1e-116 422.9 304 71.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 3.9e-115 418.7 315 68.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.1e-115 418.3 274 77.0
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.3e-114 415.2 257 79.0
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 9.6e-114 414.1 312 67.0
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.0e-112 408.7 275 72.0
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.4e-109 399.4 300 68.0
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.6e-108 396.7 305 65.6
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 5.1e-107 391.7 313 64.2
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 4.3e-106 388.7 300 65.7
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.4e-104 383.6 310 64.8
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.9e-102 375.9 229 80.8
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.5e-101 372.9 287 67.6
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 4.2e-93 345.5 276 61.2
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.3e-89 331.6 230 74.3
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.5e-86 321.2 298 55.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.5e-85 319.7 280 57.9
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 9.4e-85 317.8 271 62.0
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.0e-83 314.3 289 54.0
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.3e-81 305.1 295 54.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.1e-80 302.8 280 54.6
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-80 302.8 279 58.1
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.5e-79 298.9 309 53.7
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 1.0e-78 297.7 273 54.6
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.1e-77 294.3 297 56.6
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 4.2e-77 292.4 302 50.3
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 9.4e-77 291.2 302 50.0
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.5e-71 272.7 248 57.3
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 7.7e-71 271.6 203 67.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.1e-68 263.5 236 57.6
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 3.7e-65 252.7 195 69.7
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.8e-65 252.3 327 49.5
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.2e-63 247.7 189 67.7
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 3.6e-60 236.1 148 78.4
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.8e-59 233.8 214 60.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 2.3e-59 233.4 221 52.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.8e-57 226.5 219 54.3
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 7.0e-56 221.9 149 74.5
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 3.5e-55 219.5 183 62.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 4.4e-50 202.6 152 68.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.2e-47 194.5 288 36.1
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 7.5e-34 148.7 288 32.3
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-31 141.0 105 71.4
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.9e-29 134.0 323 27.6
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.3e-25 118.6 76 77.6
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.4e-24 117.1 133 50.4
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.4e-24 115.9 296 28.4
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 4.6e-23 112.8 287 28.9
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 2.5e-21 107.1 124 50.0
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 2.0e-18 97.4 284 29.2
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 9.2e-16 88.6 184 39.1
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 2.6e-10 70.5 56 57.1
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 5.4e-08 62.8 40 70.0


User provided reference genes

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