Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043641 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D110033 1.6e-48 195.7 93 100.0
CSS0014830 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D112628 3.0e-47 191.4 93 97.8
CSS0034797 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D112646 1.2e-27 126.3 89 73.0
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.2e-11 73.2 84 51.2
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.6e-11 72.8 84 54.8
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.6e-11 72.8 84 50.0
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.1e-11 72.4 84 52.4
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 2.7e-11 72.0 84 54.8
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 3.5e-11 71.6 88 50.0
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 3.5e-11 71.6 84 50.0
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 3.5e-11 71.6 84 50.0
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 6.0e-11 70.9 88 51.1
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 6.0e-11 70.9 89 49.4
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 1.0e-10 70.1 84 48.8
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.3e-10 69.7 63 57.1
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 1.3e-10 69.7 84 52.4
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 2.3e-10 68.9 87 50.6
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 2.3e-10 68.9 88 47.7
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 3.0e-10 68.6 92 45.7
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 3.9e-10 68.2 84 51.2
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 3.9e-10 68.2 88 47.7
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.9e-10 68.2 88 47.7
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.9e-10 68.2 88 47.7
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 3.9e-10 68.2 85 51.8
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 3.9e-10 68.2 85 51.8
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 5.1e-10 67.8 84 48.8
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 5.1e-10 67.8 88 46.6
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 5.1e-10 67.8 88 46.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 5.1e-10 67.8 84 48.8
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 5.1e-10 67.8 88 46.6
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 5.1e-10 67.8 84 48.8
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 5.1e-10 67.8 89 46.1
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 6.6e-10 67.4 88 46.6
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 8.7e-10 67.0 84 50.0
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 8.7e-10 67.0 84 47.6
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 8.7e-10 67.0 84 47.6
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 8.7e-10 67.0 84 50.0
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 8.7e-10 67.0 85 48.2
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.5e-09 66.2 91 46.2
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 1.5e-09 66.2 84 48.8
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 1.9e-09 65.9 84 46.4
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.9e-09 65.9 89 44.9
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 1.9e-09 65.9 85 45.9
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 1.9e-09 65.9 84 47.6
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 1.9e-09 65.9 88 44.3
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 1.9e-09 65.9 88 45.5
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 2.5e-09 65.5 71 50.7
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 2.5e-09 65.5 84 50.0
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 2.5e-09 65.5 84 46.4
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.5e-09 65.5 88 43.2
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.5e-09 65.5 88 43.2
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 3.3e-09 65.1 85 45.9
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 3.3e-09 65.1 85 45.9
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 3.3e-09 65.1 85 45.9
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 3.3e-09 65.1 89 44.9
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 4.3e-09 64.7 85 44.7
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 4.3e-09 64.7 84 46.4
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 5.6e-09 64.3 85 43.5
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 5.6e-09 64.3 85 43.5
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 5.6e-09 64.3 86 46.5
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 5.6e-09 64.3 84 47.6
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 5.6e-09 64.3 80 47.5
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 7.3e-09 63.9 88 44.3
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 9.6e-09 63.5 85 43.5
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 9.6e-09 63.5 85 43.5
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 9.6e-09 63.5 85 43.5
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 9.6e-09 63.5 85 45.9
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 9.6e-09 63.5 82 47.6
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 9.6e-09 63.5 85 44.7
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 1.3e-08 63.2 86 46.5
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 1.6e-08 62.8 85 44.7
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.6e-08 62.8 59 54.2
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 2.1e-08 62.4 85 43.5
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 2.1e-08 62.4 84 45.2
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 2.1e-08 62.4 85 43.5
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 2.1e-08 62.4 85 43.5
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 2.1e-08 62.4 85 43.5
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 2.1e-08 62.4 85 43.5
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 2.1e-08 62.4 85 43.5
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 2.1e-08 62.4 89 44.9
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 2.1e-08 62.4 84 47.6
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 2.1e-08 62.4 88 46.6
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 2.1e-08 62.4 88 47.7
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 2.1e-08 62.4 89 43.8
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 2.8e-08 62.0 84 47.6
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 3.6e-08 61.6 84 47.6
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 3.6e-08 61.6 85 48.2
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 3.6e-08 61.6 84 47.6
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 3.6e-08 61.6 86 44.2
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 4.8e-08 61.2 84 45.2
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 4.8e-08 61.2 84 48.8
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 4.8e-08 61.2 84 48.8
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 8.1e-08 60.5 84 44.0
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 8.1e-08 60.5 84 48.8
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 1.1e-07 60.1 85 44.7
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 1.1e-07 60.1 84 46.4
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 1.4e-07 59.7 84 45.2
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 1.8e-07 59.3 84 45.2
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 1.8e-07 59.3 84 46.4
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 1.8e-07 59.3 84 45.2
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 4.0e-07 58.2 86 40.7
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.0e-07 58.2 65 53.8
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.0e-07 58.2 65 53.8
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 4.0e-07 58.2 84 42.9
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 5.3e-07 57.8 85 40.0
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 5.3e-07 57.8 89 42.7
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 9.0e-07 57.0 84 44.0
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 9.0e-07 57.0 95 35.8
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 1.2e-06 56.6 84 44.0
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 1.2e-06 56.6 84 42.9
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 1.5e-06 56.2 84 44.0
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 2.0e-06 55.8 90 40.0
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 2.6e-06 55.5 84 44.0
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 5.8e-06 54.3 88 40.9
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 7.6e-06 53.9 84 42.9
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 7.6e-06 53.9 84 41.7
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 7.6e-06 53.9 88 39.8
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 9.9e-06 53.5 85 40.0
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 9.9e-06 53.5 85 40.0


User provided reference genes

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