Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.3e-58 227.3 117 100.0
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.2e-54 214.9 125 92.0
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.2e-32 143.3 92 82.6
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 5.6e-22 107.8 91 63.7
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 5.8e-19 97.8 83 63.9
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 1.6e-16 89.7 100 51.0
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 2.3e-15 85.9 101 54.5
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 8.6e-15 84.0 90 54.4
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.5e-14 82.4 82 58.5
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 3.3e-14 82.0 80 57.5
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.3e-14 82.0 97 49.5
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 7.3e-14 80.9 90 55.6
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.5e-14 80.5 80 58.8
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.2e-13 80.1 82 54.9
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.2e-13 77.8 84 52.4
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.8e-12 76.3 100 48.0
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 3.1e-12 75.5 93 52.7
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.0e-12 75.1 84 53.6
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.8e-12 74.3 90 45.6
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 7.5e-11 70.9 100 50.0
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 6.4e-10 67.8 83 48.2
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 8.3e-10 67.4 78 50.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.4e-09 66.6 84 50.0
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.4e-09 66.6 84 50.0
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.9e-09 66.2 98 44.9
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.4e-09 65.9 95 46.3
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 4.1e-09 65.1 87 43.7
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 5.4e-09 64.7 101 46.5
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 7.1e-09 64.3 49 65.3
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.2e-08 63.5 97 41.2
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.6e-08 63.2 97 41.2
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.1e-08 62.8 98 40.8
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 2.1e-08 62.8 83 45.8
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 3.5e-08 62.0 64 50.0
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 3.5e-08 62.0 87 47.1
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 4.6e-08 61.6 97 40.2
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 6.0e-08 61.2 100 45.0
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 7.8e-08 60.8 84 47.6
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 7.8e-08 60.8 104 40.4
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.0e-07 60.5 84 47.6
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.7e-07 59.7 101 42.6
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.7e-07 59.7 97 41.2
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 5.1e-07 58.2 101 42.6
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 5.1e-07 58.2 100 38.0
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 5.1e-07 58.2 55 56.4
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.6e-07 57.8 68 52.9
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 8.6e-07 57.4 101 42.6
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.1e-06 57.0 100 39.0
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.5e-06 56.6 88 45.5
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.5e-06 56.6 84 47.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 2.5e-06 55.8 102 39.2
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 3.3e-06 55.5 101 42.6
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 4.3e-06 55.1 101 40.6
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.6e-06 54.7 98 42.9
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 7.3e-06 54.3 101 41.6
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 7.3e-06 54.3 102 34.3
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 7.3e-06 54.3 101 38.6


User provided reference genes

Program Settings