Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 6.3e-109 397.5 209 100.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.8e-79 299.7 204 74.0
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 4.0e-79 298.5 210 76.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.3e-71 272.7 210 70.0
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.3e-71 272.7 210 70.0
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 4.4e-70 268.5 214 66.8
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 8.3e-69 264.2 205 69.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.6e-67 260.0 210 65.2
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.7e-67 259.2 207 65.2
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.0e-67 258.1 212 70.8
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 6.0e-67 258.1 212 70.8
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.7e-66 256.5 214 65.9
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.0e-66 255.8 212 70.3
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.5e-65 252.7 212 67.5
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.3e-65 251.9 209 66.0
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 5.6e-65 251.5 210 68.1
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 5.6e-65 251.5 214 68.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 7.3e-65 251.1 218 67.4
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 7.3e-65 251.1 208 67.8
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 9.5e-65 250.8 219 64.8
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 9.5e-65 250.8 212 66.0
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.2e-64 250.4 214 66.4
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.2e-64 250.4 217 60.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.6e-64 250.0 217 67.3
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 4.7e-64 248.4 216 66.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 8.0e-64 247.7 221 65.2
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.1e-63 247.3 213 68.1
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.3e-63 246.1 224 60.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.3e-63 246.1 221 64.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 4.0e-63 245.4 213 65.3
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 4.0e-63 245.4 211 61.6
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.2e-63 245.0 214 66.4
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 6.8e-63 244.6 214 65.9
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.8e-63 244.6 214 65.9
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 8.9e-63 244.2 212 62.3
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 2.6e-62 242.7 219 63.0
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 4.4e-62 241.9 221 62.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.8e-62 241.5 220 60.5
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.5e-62 241.1 213 64.3
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.8e-62 240.7 218 64.7
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 9.8e-62 240.7 210 61.9
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.8e-62 240.7 205 65.9
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-61 240.4 215 61.9
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.3e-61 240.4 206 68.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.7e-61 240.0 208 64.9
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.2e-61 239.6 211 63.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.2e-61 239.6 210 61.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.9e-61 239.2 217 62.7
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.7e-61 238.8 224 58.9
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 8.3e-61 237.7 213 62.9
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 3.2e-60 235.7 215 62.8
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.1e-60 235.3 225 61.8
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.0e-60 234.6 232 60.3
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.6e-59 233.4 208 61.1
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.1e-59 233.0 200 63.0
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 4.6e-59 231.9 209 57.4
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 6.0e-59 231.5 218 65.1
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.0e-58 230.7 209 56.9
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.3e-58 230.3 220 59.1
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.3e-58 229.6 212 57.5
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 2.3e-58 229.6 208 62.5
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 3.9e-58 228.8 209 57.4
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.9e-58 228.8 223 61.4
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 6.6e-58 228.0 215 61.9
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.1e-57 227.3 210 63.3
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.5e-57 226.9 208 62.5
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.5e-57 226.9 211 56.9
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.3e-57 225.7 221 62.0
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 7.3e-57 224.6 210 59.0
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 7.3e-57 224.6 214 57.0
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 7.3e-57 224.6 201 57.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 9.5e-57 224.2 216 61.1
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.2e-56 223.8 219 61.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.1e-56 223.0 219 59.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.1e-56 223.0 210 55.7
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.8e-56 222.6 217 60.8
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 4.7e-56 221.9 206 59.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 6.2e-56 221.5 226 59.3
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.2e-56 221.5 187 65.8
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 6.2e-56 221.5 211 61.6
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 8.1e-56 221.1 209 55.5
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.8e-55 219.9 251 55.4
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 6.8e-55 218.0 220 58.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 8.9e-55 217.6 198 56.6
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.6e-54 216.1 215 54.9
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.6e-54 216.1 217 54.4
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 4.4e-54 215.3 211 59.2
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.7e-53 213.4 206 59.2
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.9e-53 212.6 216 59.3
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.9e-53 212.6 209 54.1
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.9e-53 212.6 215 59.1
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 8.3e-53 211.1 214 59.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-52 210.7 210 59.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 1.4e-52 210.3 206 58.3
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.4e-52 210.3 209 56.5
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.9e-52 209.9 209 54.5
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.4e-52 209.5 209 56.5
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.6e-51 206.8 216 57.9
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.6e-51 206.8 210 54.8
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.1e-51 206.5 225 55.6
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.7e-51 206.1 215 55.3
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 7.8e-51 204.5 166 63.3
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-50 204.1 168 63.1
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.7e-50 203.4 215 57.2
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 5.6e-49 198.4 210 53.8
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 5.8e-46 188.3 143 69.2
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 5.8e-46 188.3 217 49.8
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.1e-44 184.1 250 44.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.1e-44 184.1 193 50.8
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 2.7e-43 179.5 220 52.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.3e-42 177.2 162 58.6
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.9e-41 173.3 217 51.6
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 5.6e-41 171.8 210 43.3
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 8.1e-40 167.9 221 47.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.4e-39 166.4 137 60.6
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.5e-38 163.7 182 49.5
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 1.9e-36 156.8 195 50.8
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 4.2e-36 155.6 224 46.0
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.2e-35 154.1 144 56.2
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.3e-34 150.6 206 43.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.7e-34 150.2 220 43.2
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 5.1e-34 148.7 120 65.0
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.5e-33 146.4 221 45.7
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 5.6e-33 145.2 149 57.7
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 9.6e-33 144.4 218 39.4
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.1e-32 143.3 170 47.6
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 6.2e-32 141.7 203 38.9
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 8.1e-32 141.4 211 42.7
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.9e-29 132.9 100 59.0
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.8e-29 132.5 215 41.4
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 4.9e-29 132.1 210 43.3
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.4e-28 129.8 190 40.5
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.1e-27 126.7 209 38.8
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.5e-27 125.9 130 57.7
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 6.0e-27 125.2 100 60.0
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 7.9e-27 124.8 122 49.2
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.0e-26 122.9 130 56.9
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 5.1e-26 122.1 142 47.9
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 9.6e-25 117.9 94 52.1
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.8e-24 116.3 130 45.4
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.2e-22 110.9 192 37.0
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 4.5e-22 109.0 209 33.0
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 3.8e-21 105.9 95 45.3
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.2e-20 102.4 147 39.5
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.1e-19 100.1 83 49.4
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-18 97.4 134 37.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 5.1e-18 95.5 202 37.6
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 8.7e-18 94.7 136 36.8
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-16 90.9 165 41.2
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.8e-16 89.7 119 51.3
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.8e-16 89.7 117 51.3
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.7e-16 89.4 101 41.6
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 8.2e-16 88.2 98 53.1
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 5.3e-15 85.5 98 45.9
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 2.1e-11 73.6 120 40.8
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 7.4e-09 65.1 66 45.5
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 2.2e-08 63.5 66 45.5


User provided reference genes

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