Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.3e-298 1028.9 494 100.0
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.0e-198 696.0 424 80.4
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 2.7e-195 685.6 502 69.5
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 3.6e-195 685.3 475 73.5
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.3e-192 676.8 474 71.3
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.2e-192 676.0 469 71.0
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.4e-191 673.3 462 72.1
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 2.6e-190 669.1 473 71.0
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 2.7e-187 659.1 462 70.3
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.7e-187 658.3 457 71.6
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 8.0e-187 657.5 459 71.0
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 4.0e-186 655.2 457 71.3
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 4.0e-186 655.2 464 70.0
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 4.4e-185 651.7 460 70.9
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.4e-185 651.7 462 71.4
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 5.7e-185 651.4 486 68.1
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 5.7e-185 651.4 451 71.0
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 2.2e-184 649.4 459 69.7
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 6.3e-184 647.9 462 70.1
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 3.1e-183 645.6 457 69.8
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 3.1e-183 645.6 464 70.7
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 4.1e-183 645.2 466 68.9
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.6e-182 643.3 465 70.8
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.0e-182 642.9 464 69.4
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 4.5e-182 641.7 471 68.2
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.7e-181 639.8 449 71.9
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.9e-181 639.0 466 70.4
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 6.5e-181 637.9 467 69.6
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.1e-180 637.1 458 69.0
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.1e-180 637.1 458 68.8
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 1.5e-180 636.7 480 67.9
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 3.2e-180 635.6 480 67.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 4.2e-180 635.2 465 70.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 9.4e-180 634.0 462 69.7
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 2.1e-179 632.9 460 70.2
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 2.1e-179 632.9 462 69.0
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.0e-178 630.6 462 67.7
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.0e-178 630.6 465 67.5
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.0e-178 630.6 457 68.7
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 1.0e-178 630.6 465 68.4
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.8e-178 629.8 465 67.5
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 4.0e-178 628.6 466 68.2
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 5.2e-178 628.2 464 67.7
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 7.5e-177 624.4 479 65.8
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.5e-177 624.4 462 69.0
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 2.2e-176 622.9 460 67.6
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.1e-175 620.5 461 67.9
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 2.0e-174 616.3 461 66.4
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 2.7e-174 615.9 460 68.0
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 7.7e-174 614.4 464 66.8
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 1.0e-173 614.0 496 63.9
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 5.0e-173 611.7 466 66.7
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.1e-172 610.5 471 66.5
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 1.1e-172 610.5 487 63.9
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.2e-172 609.0 453 67.5
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.2e-172 608.6 475 64.6
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.2e-171 607.1 459 66.7
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 3.6e-171 605.5 457 66.7
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 4.7e-171 605.1 455 67.5
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 4.7e-171 605.1 455 67.5
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.3e-170 602.8 460 67.4
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 5.2e-170 601.7 457 66.3
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 8.9e-170 600.9 462 67.1
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 4.4e-169 598.6 454 66.1
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.3e-168 597.0 462 66.7
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.9e-168 595.1 463 66.5
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 3.8e-165 585.5 466 65.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 9.5e-164 580.9 460 64.8
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 2.8e-163 579.3 462 64.9
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 8.0e-163 577.8 519 58.8
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 1.0e-162 577.4 499 62.3
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.0e-162 577.4 471 63.9
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.3e-162 576.2 411 70.6
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 4.4e-161 572.0 445 64.9
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.7e-160 570.1 476 60.5
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 4.9e-160 568.5 453 66.2
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 5.4e-159 565.1 457 63.7
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 4.7e-155 552.0 456 63.4
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 6.8e-154 548.1 448 63.6
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.5e-153 547.0 479 59.5
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 9.2e-151 537.7 476 59.9
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 4.6e-150 535.4 452 63.1
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 8.6e-149 531.2 448 60.5
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 1.1e-148 530.8 472 59.7
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 4.7e-147 525.4 539 52.9
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 8.1e-147 524.6 392 67.6
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 8.9e-146 521.2 371 69.5
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.1e-143 514.2 459 60.6
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 2.3e-141 506.5 469 57.8
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 4.7e-139 498.8 511 55.8
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 4.7e-139 498.8 391 65.7
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.4e-138 497.3 479 57.8
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.8e-138 496.9 476 56.9
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.0e-137 493.4 376 67.0
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 4.9e-136 488.8 439 59.5
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 8.4e-136 488.0 839 39.1
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 9.2e-135 484.6 444 56.5
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 2.1e-134 483.4 359 68.0
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 5.6e-132 475.3 512 51.0
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 6.9e-130 468.4 461 57.7
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.2e-128 463.4 267 81.3
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 2.9e-128 463.0 462 53.9
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 3.0e-125 453.0 480 55.6
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 3.3e-124 449.5 396 60.4
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.4e-122 443.4 540 47.4
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.9e-120 435.6 500 49.4
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 3.0e-117 426.4 262 77.9
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 6.2e-115 418.7 437 54.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.3e-112 411.0 317 65.0
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.3e-101 374.4 418 53.3
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 3.9e-101 372.9 383 56.1
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 6.9e-98 362.1 462 46.1
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 6.7e-93 345.5 589 36.8
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 8.2e-91 338.6 467 44.8
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 1.7e-88 330.9 226 67.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.8e-85 320.9 328 54.3
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.0e-77 295.0 445 38.7
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 3.1e-74 283.5 450 37.8
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.1e-71 275.0 188 69.1
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.8e-67 260.4 390 42.1
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 5.7e-60 236.1 269 44.6
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.6e-57 228.0 129 83.7
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 3.6e-54 216.9 310 40.3
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.0e-52 211.1 120 81.7
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.1e-50 203.4 292 38.7
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.0e-48 198.7 113 81.4
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 9.8e-44 182.2 109 79.8
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.7e-33 147.5 87 81.6
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 4.1e-26 123.6 66 86.4
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.1e-22 111.3 81 66.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 3.1e-21 107.5 60 78.3
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 4.3e-15 87.0 71 53.5
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.1e-13 82.4 57 63.2
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 2.4e-13 81.3 43 88.4
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.2e-12 79.0 41 85.4
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.3e-11 75.5 107 41.1
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 1.6e-09 68.6 71 45.1
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 2.7e-09 67.8 43 72.1
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 4.6e-09 67.0 71 50.7
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 6.0e-09 66.6 56 57.1


User provided reference genes

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