Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043571 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 0.0e+00 1282.3 620 100.0
Actinidia07413 Actinidia chinensis HOM05D004541 ORTHO05D006163 2.1e-285 985.3 662 75.4
CSS0034093 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 1.0e-284 983.0 662 75.7
Dinv41612 Davidia involucrata HOM05D004541 ORTHO05D006163 1.2e-280 969.5 660 74.4
CSS0021602 Camellia sinensis var. sinensis HOM05D004541 ORTHO05D006163 8.0e-277 956.8 626 76.8
vmacro06222 Vaccinium macrocarpon HOM05D004541 ORTHO05D006163 3.0e-276 954.9 663 73.6
TAR383G1084 Trochodendron aralioides HOM05D004541 ORTHO05D006163 1.2e-275 953.0 671 72.3
CANSAT56G2738 Cannabis sativa HOM05D004541 ORTHO05D006163 1.8e-273 945.7 664 71.5
CANSAT56G4378 Cannabis sativa HOM05D004541 ORTHO05D006163 1.8e-273 945.7 664 71.5
Manes.16G115100 Manihot esculenta HOM05D004541 ORTHO05D006163 3.1e-273 944.9 663 72.2
Thecc.09G109100 Theobroma cacao HOM05D004541 ORTHO05D006163 1.3e-271 939.5 664 71.5
Eucgr.C03820 Eucalyptus grandis HOM05D004541 ORTHO05D006163 3.8e-271 937.9 661 71.4
Rhsim03G0241000 Rhododendron simsii HOM05D004541 ORTHO05D006163 1.5e-270 936.0 627 75.4
RcHm_v2.0_Chr2g0090281 Rosa chinensis HOM05D004541 ORTHO05D006163 3.2e-270 934.9 656 72.1
Duzib187G1831 Durio zibethinus HOM05D004541 ORTHO05D006163 5.5e-270 934.1 663 71.5
Duzib168G0462 Durio zibethinus HOM05D004541 ORTHO05D006163 7.2e-270 933.7 662 71.1
Cc06_g09760 Coffea canephora HOM05D004541 ORTHO05D006163 2.1e-269 932.2 658 71.1
FvH4_1g04670 Fragaria vesca HOM05D004541 ORTHO05D006163 2.1e-269 932.2 663 71.3
FAN23G1653 Fragaria x ananassa HOM05D004541 ORTHO05D006163 6.1e-269 930.6 663 70.9
GSVIVG01015382001 Vitis vinifera HOM05D004541 ORTHO05D006163 2.3e-268 928.7 663 71.3
CsaV3_1G024300 Cucumis sativus L. HOM05D004541 ORTHO05D006163 3.0e-268 928.3 663 69.8
QL02p040000 Quercus lobata HOM05D004541 ORTHO05D006163 3.0e-268 928.3 656 71.5
VMungo0464G1118 Vigna mungo HOM05D004541 ORTHO05D006163 3.4e-267 924.9 663 69.5
Prupe.7G232300 Prunus persica HOM05D004541 ORTHO05D006163 7.5e-267 923.7 663 70.1
Atru.chr7.1362 Acer truncatum HOM05D004541 ORTHO05D006163 1.3e-266 922.9 663 71.0
Ca_20226_v3 Cicer arietinum L. HOM05D004541 ORTHO05D006163 1.7e-266 922.5 663 69.7
Lj7A652G69 Lonicera japonica HOM05D004541 ORTHO05D006163 2.8e-266 921.8 661 71.0
Glyma.07G085500 Glycine max HOM05D004541 ORTHO05D006163 3.7e-266 921.4 665 69.6
Glyma.09G191400 Glycine max HOM05D004541 ORTHO05D006163 4.8e-266 921.0 665 69.2
Ciclev10007326m.g Citrus clementina HOM05D004541 ORTHO05D006163 1.4e-265 919.5 662 69.8
COL.COLO4_34849 Corchorus olitorius HOM05D004541 ORTHO05D006163 1.4e-265 919.5 663 70.1
Potri.018G081400 Populus trichocarpa HOM05D004541 ORTHO05D006163 1.4e-265 919.5 663 70.1
MD15G1183900 Malus domestica HOM05D004541 ORTHO05D006163 3.1e-265 918.3 661 70.7
Gohir.A08G241500 Gossypium hirsutum HOM05D004541 ORTHO05D006163 5.4e-265 917.5 659 71.0
Gorai.004G280300 Gossypium raimondii HOM05D004541 ORTHO05D006163 5.4e-265 917.5 659 71.0
Phvul.004G164500 Phaseolus vulgaris HOM05D004541 ORTHO05D006163 5.4e-265 917.5 663 68.6
ClCG06G008600 Citrullus lanatus HOM05D004541 ORTHO05D006163 7.0e-265 917.1 663 69.8
Lalb_Chr09g0331191 Lupinus albus HOM05D004541 ORTHO05D006163 9.1e-265 916.8 663 69.1
CiPaw.03G231000 Carya illinoinensis HOM05D004541 ORTHO05D006163 4.5e-264 914.4 664 69.9
MELO3C025349.2 Cucumis melo HOM05D004541 ORTHO05D006163 8.6e-263 910.2 663 69.2
Gohir.A05G023600 Gossypium hirsutum HOM05D004541 ORTHO05D006163 1.5e-262 909.4 663 69.2
Oeu018244.1 Olea europaea HOM05D004541 ORTHO05D006163 2.5e-262 908.7 657 69.9
Medtr6g087520 Medicago truncatula HOM05D004541 ORTHO05D006163 4.2e-262 907.9 664 69.3
HanXRQChr10g0318611 Helianthus annuus HOM05D004541 ORTHO05D006163 6.1e-261 904.0 656 69.4
Nitab4.5_0007565g0030 Nicotiana tabacum HOM05D004541 ORTHO05D006163 6.1e-261 904.0 663 69.5
ECA234G1988 Erigeron canadensis HOM05D004541 ORTHO05D006163 1.0e-260 903.3 663 68.6
TWI34G1287 Tripterygium wilfordii HOM05D004541 ORTHO05D006163 1.4e-260 902.9 663 68.6
Gohir.D08G262300 Gossypium hirsutum HOM05D004541 ORTHO05D006163 5.2e-260 901.0 659 70.0
Gorai.009G025200 Gossypium raimondii HOM05D004541 ORTHO05D006163 6.8e-260 900.6 663 68.6
Sed0019002 Sechium edule HOM05D004541 ORTHO05D006163 1.2e-259 899.8 662 69.6
Cpa.g.sc23.98 Carica papaya HOM05D004541 ORTHO05D006163 2.0e-259 899.0 648 69.9
Sp6g24730 Schrenkiella parvula HOM05D004541 ORTHO05D006163 2.6e-259 898.7 661 69.1
FAN19G1993 Fragaria x ananassa HOM05D004541 ORTHO05D006163 4.4e-259 897.9 627 72.1
Psat1g043400 Pisum sativum HOM05D004541 ORTHO05D006163 4.4e-259 897.9 664 68.8
Sabra18G0068500 Salix brachista HOM05D004541 ORTHO05D006163 5.7e-259 897.5 626 71.6
BolC3t13584H Brassica oleracea HOM05D004541 ORTHO05D006163 7.5e-259 897.1 661 68.7
C03p11140 Brassica napus HOM05D004541 ORTHO05D006163 3.7e-258 894.8 661 68.5
Lj2g0016785 Lotus japonicus HOM05D004541 ORTHO05D006163 6.3e-258 894.0 659 68.4
AT5G19660 Arabidopsis thaliana HOM05D004541 ORTHO05D006163 1.1e-257 893.3 662 69.0
Carub.0006s1801 Capsella rubella HOM05D004541 ORTHO05D006163 1.1e-257 893.3 661 67.9
A03p09570 Brassica napus HOM05D004541 ORTHO05D006163 1.4e-257 892.9 661 68.4
Migut.J01157 Erythranthe guttata HOM05D004541 ORTHO05D006163 2.4e-257 892.1 661 69.3
AL6G31170 Arabidopsis lyrata HOM05D004541 ORTHO05D006163 5.4e-257 891.0 661 69.0
BraA03t10274Z Brassica rapa HOM05D004541 ORTHO05D006163 7.0e-257 890.6 661 68.2
Thhalv10012541m.g Eutrema salsugineum HOM05D004541 ORTHO05D006163 7.0e-257 890.6 660 68.8
CAN.G608.21 Capsicum annuum HOM05D004541 ORTHO05D006163 2.7e-256 888.6 662 68.3
PSO210G5975 Papaver somniferum HOM05D004541 ORTHO05D006163 2.7e-256 888.6 667 67.8
THA.LOC104804980 Tarenaya hassleriana HOM05D004541 ORTHO05D006163 1.3e-255 886.3 663 67.7
PSO210G2419 Papaver somniferum HOM05D004541 ORTHO05D006163 1.7e-255 885.9 667 67.5
PGR102G1372 Punica granatum HOM05D004541 ORTHO05D006163 6.6e-255 884.0 656 67.7
Haze_25754 Corylus avellana HOM05D004541 ORTHO05D006163 8.6e-255 883.6 657 68.6
TPR.G10041 Trifolium pratense HOM05D004541 ORTHO05D006163 1.1e-254 883.2 646 68.7
Aqoxy7G01635 Aquilegia oxysepala HOM05D004541 ORTHO05D006163 1.5e-254 882.9 667 67.5
MBI01_g28040_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 9.5e-254 880.2 634 69.7
Solyc09g007300.3 Solanum lycopersicum HOM05D004541 ORTHO05D006163 2.8e-253 878.6 662 68.1
CARHR193250 Cardamine hirsuta HOM05D004541 ORTHO05D006163 8.0e-253 877.1 658 67.9
Gohir.D05G025100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 8.0e-253 877.1 653 68.3
Hund26211 Selenicereus undatus HOM05D004541 ORTHO05D006163 1.4e-252 876.3 663 66.8
Nn8g39153 Nelumbo nucifera HOM05D004541 ORTHO05D006163 2.3e-252 875.5 667 66.6
Aa31LG3G3200 Aethionema arabicum HOM05D004541 ORTHO05D006163 4.0e-252 874.8 649 68.1
MD02G1045500 Malus domestica HOM05D004541 ORTHO05D006163 6.8e-252 874.0 579 74.8
BcaB01g04837 Brassica carinata HOM05D004541 ORTHO05D006163 4.4e-251 871.3 651 67.9
unitig_8.g3279 Utricularia gibba HOM05D004541 ORTHO05D006163 5.8e-251 870.9 658 66.6
Lsat_1_v5_gn_5_103081 Lactuca sativa HOM05D004541 ORTHO05D006163 1.6e-248 862.8 642 68.2
Sc18g0001290 Simmondsia chinensis HOM05D004541 ORTHO05D006163 1.3e-247 859.8 603 70.3
FAN26G2455 Fragaria x ananassa HOM05D004541 ORTHO05D006163 2.3e-247 859.0 595 71.4
DCAR_024689 Daucus carota HOM05D004541 ORTHO05D006163 8.6e-247 857.1 627 68.7
Sopen00g009260 Solanum pennellii HOM05D004541 ORTHO05D006163 4.3e-246 854.7 647 68.0
AUR62010981 Chenopodium quinoa HOM05D004541 ORTHO05D006163 1.4e-244 849.7 627 67.9
Peaxi162Scf00005g04811 Petunia axillaris HOM05D004541 ORTHO05D006163 3.1e-244 848.6 637 68.9
EL10Ac8g18481 Beta vulgaris HOM05D004541 ORTHO05D006163 4.4e-243 844.7 627 67.8
Gohir.D05G025033 Gossypium hirsutum HOM05D004541 ORTHO05D006163 4.4e-243 844.7 653 66.6
Nitab4.5_0000754g0130 Nicotiana tabacum HOM05D004541 ORTHO05D006163 4.4e-243 844.7 625 67.7
SGA_v2.0_scaffold17G08177 Striga asiatica HOM05D004541 ORTHO05D006163 4.4e-243 844.7 605 69.8
Ah.14g082120 Amaranthus hybridus HOM05D004541 ORTHO05D006163 2.4e-241 839.0 663 64.9
Nitab4.5_0001142g0040 Nicotiana tabacum HOM05D004541 ORTHO05D006163 3.5e-240 835.1 596 70.5
Dinv36641 Davidia involucrata HOM05D004541 ORTHO05D006163 6.0e-240 834.3 603 71.3
VMungo0464G1847 Vigna mungo HOM05D004541 ORTHO05D006163 8.1e-237 823.9 653 64.9
AUR62021490 Chenopodium quinoa HOM05D004541 ORTHO05D006163 1.6e-232 809.7 663 63.5
CDE05G1732 Ceratophyllum demersum HOM05D004541 ORTHO05D006163 3.5e-232 808.5 666 62.3
SHI02736 Sapria himalayana HOM05D004541 ORTHO05D006163 8.6e-231 803.9 661 62.0
ATR0315G070 Amborella trichopoda HOM05D004541 ORTHO05D006163 5.2e-228 794.7 589 67.2
HPP92_003938 Vanilla planifolia HOM05D004541 ORTHO05D006163 2.2e-226 789.3 588 66.0
Os06g0163500 Oryza sativa ssp. japonica HOM05D004541 ORTHO05D006163 1.5e-222 776.5 670 59.7
Lsat_1_v5_gn_8_105101 Lactuca sativa HOM05D004541 ORTHO05D006163 3.5e-216 755.4 585 63.6
CAN.G933.11 Capsicum annuum HOM05D004541 ORTHO05D006163 4.2e-209 731.9 661 59.8
SEGI_28317 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 6.0e-200 701.4 556 64.0
Mapoly0155s0018 Marchantia polymorpha HOM05D004541 ORTHO05D006163 1.1e-196 690.6 553 62.2
Nitab4.5_0006929g0020 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.5e-193 679.5 551 63.5
SMO347G0168 Selaginella moellendorffii HOM05D004541 ORTHO05D006163 1.9e-190 669.8 592 57.1
Zm00001eb375700 Zea mays HOM05D004541 ORTHO05D006163 2.0e-187 659.8 591 57.4
Pp3c3_30280 Physcomitrium patens HOM05D004541 ORTHO05D006163 1.5e-174 617.1 668 51.6
AagrBONN_evm.TU.Sc2ySwM_344.4490 Anthoceros agrestis HOM05D004541 ORTHO05D006163 1.0e-159 567.8 418 65.3
Medtr6g086780 Medicago truncatula HOM05D004541 ORTHO05D006163 2.4e-148 530.0 472 58.3
SEGI_41546 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 5.7e-142 508.8 359 70.5
Cre14.g628800 Chlamydomonas reinhardtii HOM05D004541 ORTHO05D006163 1.3e-138 497.7 498 49.8
MCO08G100 Micromonas commoda HOM05D004541 ORTHO05D006163 1.6e-136 490.7 573 45.9
CAN.G268.4 Capsicum annuum HOM05D004541 ORTHO05D006163 4.0e-135 486.1 441 60.3
PRCOL_00005929 Prasinoderma coloniale HOM05D004541 ORTHO05D006163 1.5e-129 467.6 586 42.3
PGSC0003DMG400017594 Solanum tuberosum HOM05D004541 ORTHO05D006163 1.7e-109 401.0 417 53.0
SGA_v2.0_scaffold176G39378 Striga asiatica HOM05D004541 ORTHO05D006163 5.9e-62 243.0 214 60.7
Nitab4.5_0000754g0080 Nicotiana tabacum HOM05D004541 ORTHO05D006163 2.2e-45 188.0 536 30.0
MBI04_g39576_MAGBIO Magnolia biondii HOM05D004541 ORTHO05D006163 3.0e-42 177.6 124 74.2
CBR_g30877 Chara braunii HOM05D004541 ORTHO05D000002 1.7e-37 161.8 124 56.5
BcaC04g19361 Brassica carinata HOM05D002433 ORTHO05D003234 3.8e-29 134.0 165 49.1
BolC9t58517H Brassica oleracea HOM05D004541 ORTHO05D006163 8.6e-29 132.9 145 53.1
C09p56520 Brassica napus HOM05D004541 ORTHO05D006163 5.6e-28 130.2 119 59.7
CBR_g30889 Chara braunii HOM05D001523 ORTHO05D000184 8.9e-26 122.9 142 46.5
SEGI_08862 Sequoiadendron giganteum HOM05D004541 ORTHO05D006163 5.0e-21 107.1 236 31.8
CBR_g30873 Chara braunii HOM05D004541 ORTHO05D000800 1.7e-16 92.0 70 71.4
Gorai.006G096000 Gossypium raimondii HOM05D004541 ORTHO05D006163 3.2e-15 87.8 66 72.7
Gohir.A06G119402 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.3e-12 77.8 41 95.1
Gohir.A08G250201 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.3e-12 77.8 41 95.1
Gohir.A10G147200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.3e-12 77.8 41 95.1
Gohir.D04G083366 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.3e-12 77.8 41 95.1
Gohir.D07G157100 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.3e-12 77.8 41 95.1
Gohir.D09G033000 Gossypium hirsutum HOM05D004541 ORTHO05D006163 3.3e-12 77.8 41 95.1
Gohir.A12G025200 Gossypium hirsutum HOM05D004541 ORTHO05D006163 9.5e-12 76.3 41 92.7
CBR_g30886 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-09 67.8 33 84.8
Actinidia32680 Actinidia chinensis HOM05D004541 ORTHO05D006163 4.9e-08 63.9 69 52.2
Aa31LG3G3160 Aethionema arabicum HOM05D004541 ORTHO05D058835 6.4e-08 63.5 147 35.4


User provided reference genes

Program Settings