Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 0.0e+00 1978.0 995 100.0
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1278.8 883 73.2
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1210.7 920 67.2
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1181.0 980 63.3
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1102.8 906 63.6
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 1.3e-308 1063.1 904 60.8
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 1.2e-306 1056.6 905 60.3
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 6.5e-305 1050.8 918 59.2
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 2.3e-302 1042.3 737 70.8
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 2.2e-297 1025.8 908 59.1
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 2.7e-295 1018.8 884 58.5
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 1.4e-291 1006.5 944 55.8
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 2.5e-288 995.7 886 58.0
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 5.5e-288 994.6 919 56.5
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 5.2e-286 988.0 883 58.1
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 1.2e-285 986.9 883 57.4
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 3.4e-285 985.3 908 55.7
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 9.8e-285 983.8 900 57.2
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.0e-282 976.1 885 56.9
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 4.3e-280 968.4 879 56.5
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 9.5e-280 967.2 885 56.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.6e-279 965.3 912 54.8
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 1.0e-278 963.8 881 55.4
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.4e-278 963.4 913 54.9
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.0e-278 962.2 912 55.4
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 1.5e-277 959.9 893 56.2
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 2.0e-277 959.5 898 56.0
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 4.4e-277 958.4 887 56.3
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 7.5e-277 957.6 885 55.6
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 1.8e-275 953.0 921 55.0
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 1.8e-275 953.0 921 55.0
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 5.4e-275 951.4 885 55.7
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 2.0e-274 949.5 903 53.6
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 2.7e-274 949.1 919 54.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 2.7e-274 949.1 885 55.9
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 3.5e-274 948.7 886 55.6
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 2.3e-273 946.0 885 56.0
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.0e-273 945.7 909 54.2
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 3.0e-273 945.7 891 55.8
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 1.1e-272 943.7 911 54.8
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 1.9e-272 943.0 912 54.7
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 7.3e-272 941.0 909 53.8
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 9.5e-272 940.6 928 55.1
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 9.5e-272 940.6 886 55.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.8e-270 936.4 910 53.7
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 1.5e-269 933.3 921 53.4
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 5.8e-269 931.4 879 53.9
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 6.4e-268 927.9 921 53.7
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.4e-267 926.8 899 54.8
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 4.6e-266 921.8 919 52.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 1.0e-265 920.6 877 53.5
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 4.3e-264 915.2 904 54.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 7.5e-261 904.4 840 56.0
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 3.2e-259 899.0 840 55.6
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 3.9e-257 892.1 908 51.0
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 9.5e-256 887.5 899 51.8
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 3.1e-254 882.5 884 52.4
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.0e-254 882.1 891 52.0
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 5.2e-254 881.7 881 51.3
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.2e-253 880.6 885 52.1
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 2.0e-253 879.8 888 52.1
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 4.4e-253 878.6 884 52.1
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 1.9e-251 873.2 908 51.1
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 5.4e-251 871.7 949 49.0
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.1e-250 869.8 904 49.4
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 2.1e-247 859.8 889 51.7
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 4.7e-247 858.6 893 50.4
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 4.7e-247 858.6 891 50.2
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 4.4e-245 852.0 905 50.4
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.6e-242 843.6 889 51.1
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.3e-241 839.7 751 56.7
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 6.6e-241 838.2 891 50.7
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 3.3e-240 835.9 924 49.1
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 7.3e-240 834.7 922 48.8
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.6e-239 833.6 923 48.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 1.8e-238 830.1 890 50.7
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 2.6e-237 826.2 749 56.3
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 6.9e-230 801.6 739 55.9
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 4.9e-228 795.4 892 49.3
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.4e-227 793.9 885 48.0
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.4e-227 793.1 899 48.9
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 6.7e-225 785.0 898 47.7
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 3.3e-224 782.7 903 46.5
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.8e-223 779.6 900 47.6
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 9.3e-219 764.6 921 45.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 2.1e-218 763.5 750 54.7
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.7e-218 763.1 932 44.5
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.6e-210 736.1 567 66.1
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.3e-204 717.6 659 57.5
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 5.1e-201 705.7 698 54.3
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.0e-193 679.9 583 59.0
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.2e-186 657.9 915 42.2
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.2e-178 631.3 880 39.3
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.7e-178 630.2 596 55.2
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.1e-158 565.1 648 46.3
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.1e-158 565.1 533 54.6
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 2.3e-148 530.8 575 48.9
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 4.3e-115 420.2 364 58.8
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 7.6e-104 382.9 385 51.7
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 5.5e-102 376.7 309 60.5
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 2.9e-95 354.4 308 58.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.6e-80 304.7 873 27.6
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 1.8e-76 292.0 261 54.8
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 9.7e-75 286.2 220 62.3
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-71 275.8 227 60.4
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.2e-69 269.2 179 69.3
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 7.5e-67 260.0 237 55.7
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-52 212.6 179 62.6
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.4e-51 208.0 179 61.5
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 3.7e-50 204.5 206 51.5
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.9e-50 204.1 179 60.9
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 1.6e-45 189.1 130 66.9
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 1.9e-41 175.6 222 41.9
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 4.6e-40 171.0 128 64.8
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 3.0e-39 168.3 133 64.7
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.9e-39 167.9 869 22.1
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.4e-36 159.5 146 53.4
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.3e-36 158.7 115 60.0
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 2.0e-35 155.6 126 61.1
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 5.4e-33 147.5 154 46.8
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 5.4e-33 147.5 95 66.3
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.5e-30 138.7 941 22.0
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 5.2e-28 131.0 446 23.1
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 3.7e-26 124.8 112 54.5
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.4e-25 122.9 252 30.6
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.9e-23 114.8 100 48.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.9e-22 112.5 84 59.5
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.2e-21 109.8 84 57.1
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 7.1e-17 94.0 68 63.2
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.6e-13 82.8 92 43.5
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 2.1e-13 82.4 59 67.8
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.6e-13 81.6 211 31.3
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 6.2e-13 80.9 59 66.1
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.1e-12 80.1 66 63.6
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 4.0e-12 78.2 277 27.1
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.4e-11 75.1 246 24.0
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.4e-11 74.7 193 28.0
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 9.3e-09 67.0 67 49.3
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.6e-08 66.2 128 35.2
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 2.7e-08 65.5 45 60.0
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.6e-08 64.7 254 26.0
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 7.8e-08 63.9 45 60.0
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.3e-07 63.2 98 37.8
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.9e-06 59.3 255 25.1
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 9.6e-06 57.0 38 63.2


User provided reference genes

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