Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.8e-128 461.5 226 100.0
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 7.5e-116 420.6 213 97.2
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 1.2e-92 343.6 226 78.3
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 6.4e-91 337.8 225 76.4
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.9e-83 312.4 230 70.4
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 6.6e-80 301.2 226 65.5
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 4.3e-79 298.5 226 66.4
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 2.1e-78 296.2 228 67.1
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 2.1e-78 296.2 228 67.1
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 4.8e-78 295.0 235 65.5
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 1.4e-77 293.5 206 74.3
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 6.9e-77 291.2 183 77.0
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 1.2e-76 290.4 213 69.5
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 7.6e-76 287.7 228 64.9
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 9.9e-76 287.3 183 76.5
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 1.3e-75 287.0 217 67.7
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 2.2e-75 286.2 230 60.9
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 2.2e-75 286.2 229 65.5
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 6.4e-75 284.6 227 67.8
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 6.4e-75 284.6 191 74.9
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.1e-74 283.9 226 65.5
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.9e-74 283.1 229 64.2
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 4.2e-74 282.0 229 63.3
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 4.2e-74 282.0 228 64.5
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 1.6e-73 280.0 227 67.0
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 2.7e-73 279.3 235 63.0
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.7e-73 279.3 233 64.8
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 7.9e-73 277.7 227 66.1
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.7e-72 276.6 227 63.9
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 3.0e-72 275.8 237 62.0
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 3.9e-72 275.4 188 71.3
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 3.9e-72 275.4 185 70.3
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 3.9e-72 275.4 223 64.1
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 3.9e-72 275.4 233 62.2
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 6.6e-72 274.6 181 74.0
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 6.6e-72 274.6 199 68.3
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 1.5e-71 273.5 231 63.2
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 1.9e-71 273.1 226 62.4
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 2.5e-71 272.7 230 60.4
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 5.6e-71 271.6 232 60.3
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 5.6e-71 271.6 219 65.8
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.6e-70 270.0 185 69.2
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 8.1e-70 267.7 229 57.6
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.1e-69 267.3 210 64.3
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 1.4e-69 266.9 226 63.3
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 3.1e-69 265.8 206 66.0
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 3.1e-69 265.8 220 61.8
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 6.9e-69 264.6 182 68.1
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 1.2e-68 263.8 186 68.3
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 1.5e-68 263.5 203 64.0
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 2.0e-68 263.1 213 61.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.6e-68 262.7 194 65.5
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 2.6e-68 262.7 196 63.3
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.5e-68 261.9 250 58.4
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 1.3e-67 260.4 212 62.3
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 2.9e-67 259.2 227 61.2
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 4.9e-67 258.5 190 64.2
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 8.4e-67 257.7 230 57.8
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 1.1e-66 257.3 217 59.9
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 1.1e-66 257.3 217 60.8
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 1.4e-66 256.9 216 60.2
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 3.2e-66 255.8 221 58.8
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.2e-66 255.4 184 69.6
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.2e-66 255.4 184 69.6
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 4.2e-66 255.4 191 65.4
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 4.2e-66 255.4 210 61.4
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 3.5e-65 252.3 231 55.8
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 4.6e-65 251.9 207 64.7
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 4.6e-65 251.9 215 59.5
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 6.0e-65 251.5 171 71.9
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 7.9e-65 251.1 201 62.2
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 8.7e-64 247.7 191 63.9
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 8.7e-64 247.7 213 57.7
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.1e-63 247.3 200 66.5
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.3e-62 243.8 232 53.9
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 1.3e-62 243.8 189 64.0
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.6e-62 243.4 184 63.6
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 1.6e-62 243.4 207 58.9
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 2.1e-62 243.0 191 63.4
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 2.1e-62 243.0 191 63.4
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 3.7e-62 242.3 195 62.1
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 6.2e-62 241.5 184 63.0
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 8.1e-62 241.1 191 62.3
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 5.3e-61 238.4 230 53.0
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 5.3e-61 238.4 245 55.1
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 6.9e-61 238.0 157 70.7
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 9.0e-61 237.7 205 63.4
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 1.5e-60 236.9 194 62.4
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 7.6e-60 234.6 246 53.7
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 1.0e-59 234.2 178 64.6
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 3.8e-59 232.3 178 64.0
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.4e-58 230.3 182 63.2
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.2e-58 229.2 139 84.2
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 4.2e-58 228.8 178 62.9
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 5.5e-58 228.4 158 70.9
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 7.4e-55 218.0 125 80.0
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 4.8e-54 215.3 231 52.8
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 6.3e-54 214.9 156 66.7
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 6.3e-54 214.9 154 65.6
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 4.1e-53 212.2 143 69.9
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 1.4e-50 203.8 146 63.0
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 3.2e-50 202.6 175 60.6
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 1.2e-49 200.7 129 73.6
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 8.7e-48 194.5 127 70.1
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 6.3e-46 188.3 144 55.6
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 1.8e-45 186.8 147 59.2
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 6.5e-43 178.3 159 64.2
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 6.5e-43 178.3 159 64.2
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 1.6e-41 173.7 111 69.4
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 2.7e-41 172.9 189 50.8
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 5.1e-40 168.7 138 65.2
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 2.6e-36 156.4 93 79.6
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 8.8e-32 141.4 82 82.9
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 4.4e-31 139.0 139 57.6
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 5.7e-31 138.7 140 55.0
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 7.4e-31 138.3 91 73.6
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.8e-29 133.7 144 52.8
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 9.1e-29 131.3 128 44.5
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.2e-28 131.0 131 45.8
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 1.1e-26 124.4 136 42.6
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 4.0e-24 115.9 101 60.4
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.0e-16 91.3 114 36.0
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 5.2e-08 62.4 48 58.3
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 5.7e-07 58.9 36 75.0
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 2.8e-06 56.6 168 26.2


User provided reference genes

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