Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 3.7e-41 171.8 139 100.0
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 5.8e-18 94.7 96 62.5
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 5.8e-18 94.7 96 62.5
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.7e-17 93.2 84 56.0
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 2.9e-17 92.4 106 60.4
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.7e-15 85.9 42 88.1
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 6.0e-15 84.7 42 85.7
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 6.0e-15 84.7 95 49.5
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 6.0e-15 84.7 42 85.7
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 7.8e-15 84.3 43 76.7
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 7.8e-15 84.3 88 51.1
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 1.7e-14 83.2 81 50.6
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.3e-14 82.8 87 51.7
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 2.3e-14 82.8 89 49.4
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.3e-14 82.8 94 47.9
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 3.0e-14 82.4 43 83.7
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 6.6e-14 81.3 91 59.3
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 6.6e-14 81.3 42 78.6
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 6.6e-14 81.3 91 53.8
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 8.7e-14 80.9 43 76.7
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 8.7e-14 80.9 76 50.0
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 8.7e-14 80.9 87 49.4
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.1e-13 80.5 93 57.0
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.1e-13 80.5 93 57.0
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.1e-13 80.5 103 46.6
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 1.1e-13 80.5 43 76.7
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 1.5e-13 80.1 43 79.1
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.5e-13 80.1 43 79.1
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.5e-13 80.1 43 79.1
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 1.5e-13 80.1 99 46.5
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 2.5e-13 79.3 42 81.0
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 2.5e-13 79.3 40 82.5
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 3.3e-13 79.0 91 46.2
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 4.3e-13 78.6 77 50.6
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 4.3e-13 78.6 40 82.5
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 9.6e-13 77.4 69 56.5
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 1.3e-12 77.0 42 81.0
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.6e-12 76.6 43 72.1
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 1.6e-12 76.6 79 49.4
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.6e-12 76.6 42 76.2
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 1.6e-12 76.6 40 80.0
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 2.8e-12 75.9 42 76.2
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 3.6e-12 75.5 42 73.8
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 3.6e-12 75.5 42 73.8
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 3.6e-12 75.5 42 73.8
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 4.8e-12 75.1 43 81.4
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 4.8e-12 75.1 42 69.0
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 6.2e-12 74.7 42 71.4
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 1.1e-11 73.9 42 71.4
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 1.1e-11 73.9 81 51.9
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 1.1e-11 73.9 88 45.5
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 1.4e-11 73.6 42 71.4
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.4e-11 73.6 42 69.0
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 1.8e-11 73.2 42 71.4
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.8e-11 73.2 42 71.4
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.4e-11 72.8 40 72.5
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 3.1e-11 72.4 43 67.4
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 4.0e-11 72.0 41 75.6
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 5.3e-11 71.6 40 70.0
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 5.3e-11 71.6 43 69.8
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 5.3e-11 71.6 41 73.2
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 5.3e-11 71.6 42 61.9
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 6.9e-11 71.2 43 65.1
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 9.0e-11 70.9 40 70.0
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 9.0e-11 70.9 42 64.3
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 9.0e-11 70.9 87 43.7
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.2e-10 70.5 98 44.9
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 1.2e-10 70.5 41 75.6
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.2e-10 70.5 41 75.6
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 1.2e-10 70.5 92 41.3
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 1.2e-10 70.5 40 65.0
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 1.5e-10 70.1 41 70.7
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 2.0e-10 69.7 40 67.5
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.0e-10 69.7 41 75.6
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 2.0e-10 69.7 83 41.0
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 2.6e-10 69.3 41 65.9
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 2.6e-10 69.3 41 68.3
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 2.6e-10 69.3 40 67.5
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 2.6e-10 69.3 42 71.4
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 2.6e-10 69.3 78 52.6
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 3.4e-10 68.9 43 62.8
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 3.4e-10 68.9 40 67.5
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 3.4e-10 68.9 43 65.1
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 4.4e-10 68.6 38 71.1
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.4e-10 68.6 93 46.2
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.4e-10 68.6 93 46.2
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 5.8e-10 68.2 40 65.0
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.6e-10 67.8 77 51.9
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.6e-10 67.8 41 65.9
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.3e-09 67.0 77 51.9
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.7e-09 66.6 89 40.4
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 2.2e-09 66.2 41 63.4
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.2e-09 66.2 43 65.1
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.2e-09 66.2 43 65.1
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.2e-09 66.2 43 65.1
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 2.2e-09 66.2 83 49.4
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 2.9e-09 65.9 93 39.8
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 3.8e-09 65.5 42 59.5
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 4.9e-09 65.1 92 43.5
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 6.4e-09 64.7 42 61.9
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 1.1e-08 63.9 92 40.2
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.1e-08 63.9 43 58.1
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 1.1e-08 63.9 81 44.4
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 1.1e-08 63.9 37 64.9
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 1.4e-08 63.5 43 58.1
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.9e-08 63.2 45 60.0
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.9e-08 63.2 43 58.1
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 1.9e-08 63.2 43 58.1
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.9e-08 63.2 42 66.7
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.9e-08 63.2 41 63.4
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.2e-08 62.4 44 61.4
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 4.2e-08 62.0 44 61.4
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 4.2e-08 62.0 44 61.4
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 4.2e-08 62.0 36 66.7
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 5.4e-08 61.6 38 63.2
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.4e-08 61.6 44 68.2
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 5.4e-08 61.6 82 37.8
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 7.1e-08 61.2 43 58.1
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 7.1e-08 61.2 38 60.5
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 9.3e-08 60.8 43 55.8
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 9.3e-08 60.8 95 46.3
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 1.2e-07 60.5 44 54.5
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 1.2e-07 60.5 36 63.9
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.6e-07 60.1 37 64.9
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.6e-07 60.1 44 65.9
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.7e-07 59.3 41 51.2
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.7e-07 59.3 41 51.2
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 2.7e-07 59.3 43 58.1
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 2.7e-07 59.3 39 59.0
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 2.7e-07 59.3 43 51.2
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 2.7e-07 59.3 41 63.4
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.5e-07 58.9 41 51.2
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 4.6e-07 58.5 41 56.1
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-07 58.5 44 63.6
unitig_699.g19875 Utricularia gibba HOM05D002914 ORTHO05D003196 4.6e-07 58.5 42 57.1
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 6.0e-07 58.2 42 59.5
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 6.0e-07 58.2 92 40.2
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 6.0e-07 58.2 38 63.2
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 6.0e-07 58.2 41 58.5
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 6.0e-07 58.2 41 58.5
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 7.9e-07 57.8 43 55.8
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 7.9e-07 57.8 43 53.5
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 7.9e-07 57.8 41 56.1
unitig_22.g6856 Utricularia gibba HOM05D002914 ORTHO05D003196 7.9e-07 57.8 77 40.3
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 1.0e-06 57.4 41 58.5
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.0e-06 57.4 41 61.0
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.0e-06 57.4 39 59.0
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 1.3e-06 57.0 43 55.8
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.3e-06 57.0 41 56.1
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 1.3e-06 57.0 43 55.8
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.7e-06 56.6 41 58.5
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.7e-06 56.6 41 56.1
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 1.7e-06 56.6 41 58.5
Peaxi162Scf00003g01911 Petunia axillaris HOM05D002914 ORTHO05D003196 1.7e-06 56.6 42 61.9
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 1.7e-06 56.6 41 56.1
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 2.3e-06 56.2 41 56.1
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 2.3e-06 56.2 43 53.5
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.3e-06 56.2 41 56.1
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.3e-06 56.2 41 56.1
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.3e-06 56.2 41 56.1
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.0e-06 55.8 38 60.5
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 3.0e-06 55.8 43 53.5
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.0e-06 55.8 41 56.1
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 3.9e-06 55.5 41 56.1
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 6.6e-06 54.7 43 53.5
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 6.6e-06 54.7 43 51.2
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 6.6e-06 54.7 43 53.5
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 6.6e-06 54.7 39 59.0
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 8.7e-06 54.3 38 55.3
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 8.7e-06 54.3 43 53.5
Potri.006G052500 Populus trichocarpa HOM05D002914 ORTHO05D003196 8.7e-06 54.3 38 55.3
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 8.7e-06 54.3 41 51.2


User provided reference genes

Program Settings