Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 2181.8 1088 100.0
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 2159.8 1088 99.2
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1921.0 1088 87.0
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1903.3 1086 86.8
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1865.9 1088 84.7
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1864.0 1082 85.4
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1862.4 1116 83.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1848.6 1086 83.6
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1771.5 1086 80.8
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1756.9 1090 79.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1738.8 1080 78.4
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1733.8 1089 78.5
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1727.6 1090 78.9
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1726.5 1081 79.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1723.0 1088 78.0
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1717.6 996 85.4
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1713.7 1087 78.0
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1708.3 1083 77.3
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1708.0 1090 77.1
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1704.5 1092 77.3
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1701.8 1087 77.0
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1699.9 1079 78.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1697.6 1087 76.7
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1692.6 1080 77.5
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1689.1 1088 76.5
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1084 75.9
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1077 77.2
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1679.8 1084 76.7
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1088 76.1
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1084 75.6
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1096 75.5
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1674.8 1098 75.7
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1671.8 1077 76.5
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1671.0 1093 76.7
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1088 75.7
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1668.3 1083 75.3
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1088 75.6
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1667.1 1084 75.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1666.4 1088 75.5
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1665.6 1081 75.6
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1087 74.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1664.4 1085 75.6
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1664.0 1077 76.2
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1664.0 1087 75.4
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1663.7 1107 74.5
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1663.3 1069 77.0
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1662.9 1089 75.1
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1662.5 1087 74.4
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1659.8 1086 74.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1658.7 1170 71.6
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1658.7 1082 75.2
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1655.6 1080 75.4
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1653.6 1086 74.3
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1170 71.5
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1089 74.9
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1652.5 1089 75.5
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1652.1 1077 76.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1651.3 1080 74.6
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1649.4 1091 74.6
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1640.9 1085 74.7
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1640.6 1085 74.6
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1634.0 1103 72.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1633.6 1085 74.4
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1632.8 1083 73.8
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1632.1 1083 73.5
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1632.1 1083 73.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1627.5 1089 74.4
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1627.1 1110 73.9
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1626.7 1091 72.8
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1624.0 1084 74.3
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1623.2 1088 74.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1622.8 1089 73.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1622.4 1080 73.9
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1622.1 1079 74.6
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1620.9 1080 73.8
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1089 73.4
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1612.4 1079 73.7
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1612.0 1081 73.7
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1610.9 1080 73.9
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1610.9 1089 73.2
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1610.1 1109 72.4
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1150 69.7
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1609.0 1016 78.1
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1607.4 1089 73.0
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1605.5 1080 73.3
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1604.7 1085 72.7
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1078 71.8
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1080 73.0
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1080 73.1
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1080 73.1
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1594.7 1069 73.8
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1087 72.2
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1078 72.2
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1098 73.1
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1587.0 1080 72.8
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1585.5 1080 72.3
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1080 72.7
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1078 72.6
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1080 72.6
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1074 71.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1110 70.2
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1556.2 1050 72.4
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1536.5 1092 73.1
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1528.1 996 76.2
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 980 75.7
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1516.9 1089 69.9
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1515.0 1085 70.5
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1512.7 1112 68.5
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1501.5 1077 67.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1454.1 1009 72.5
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1449.9 1098 64.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1254.2 792 77.8
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1251.5 698 88.5
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1246.9 717 86.3
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1231.9 680 88.8
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1176.8 1087 53.8
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1174.5 1078 53.6
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1166.0 751 76.0
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1154.0 1120 51.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1132.1 1086 51.8
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1124.8 1082 51.9
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.2e-306 1055.8 837 62.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 4.1e-284 981.9 815 62.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.4e-268 929.5 693 70.1
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 3.8e-266 922.2 614 75.4
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 1.5e-254 883.6 989 52.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 4.4e-254 882.1 953 48.2
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 2.5e-241 839.7 504 81.3
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.4e-238 829.3 632 65.8
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 2.4e-188 663.7 608 56.6
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.1e-171 605.9 434 71.0
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 7.2e-156 555.8 312 84.3
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 3.8e-141 506.9 384 68.0
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.5e-134 483.8 312 75.0
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.7e-78 298.1 290 54.5
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 4.0e-74 284.3 244 61.1
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.7e-67 261.2 205 63.9
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 3.2e-63 248.1 136 80.1
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.5e-49 202.6 139 68.3
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.2e-39 168.3 133 61.7
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.7e-36 156.8 200 48.0
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 3.8e-32 144.8 88 83.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 6.5e-32 144.1 156 50.6
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 9.4e-31 140.2 73 86.3
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 7.5e-28 130.6 108 58.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 4.5e-25 121.3 94 66.0
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 9.5e-15 87.0 47 89.4
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 8.0e-14 84.0 123 43.1
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 1.4e-13 83.2 49 75.5
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 1.6e-09 69.7 33 97.0
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 5.9e-09 67.8 77 41.6
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 6.6e-08 64.3 39 76.9


User provided reference genes

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